Array 1 364708-365815 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061052.1 Pasteurella multocida strain PS3536-1p chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 364708 28 100.0 32 ............................ GATCAGAGCTATGCTGTTTGTAACGGAGTTTT 364768 28 100.0 32 ............................ ATTCTTTAAAGAATACAAGCTCAACTGTATGA 364828 28 100.0 32 ............................ ACTACAGACGCACTACGATGATATCCTGTCTG 364888 28 100.0 32 ............................ TTCCGATTTTTGATAGTCAAAGACTACTGAGT 364948 28 100.0 32 ............................ AAACGGTCGTGCGTCGTTCGGGTTGTGATCTT 365008 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 365068 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 365128 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 365188 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 365248 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 365308 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 365368 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 365428 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 365488 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 365548 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 365608 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 365668 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 365728 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 365788 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1591523-1588373 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061052.1 Pasteurella multocida strain PS3536-1p chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1591522 28 100.0 32 ............................ TTTTCAAACAGAATCATTGCGAGCTGGGTATC 1591462 28 100.0 32 ............................ CGATAGAGCGAAAAACGTTGCGACCAATCATC 1591402 28 100.0 32 ............................ GCACAAAATCACGTGACAGGTTGTCAGTGTGA 1591342 28 100.0 32 ............................ ATCTACTTTACACATTACAGGCAAAGGGCGGG 1591282 28 100.0 32 ............................ GTGCACTGTAAAATCATAATCTAGTTCGTAGT 1591222 28 100.0 32 ............................ GCAGTTGACTCAACCTCGACAATGAATGCGTT 1591162 28 100.0 32 ............................ ACGAGTTCATGTGTGTTCTTATCGAAGTGTTC 1591102 28 100.0 32 ............................ ATTTCAGTTTCCCCTGTGTGTGTTGTTGTTAA 1591042 28 100.0 32 ............................ AACTATCCCGTATCACTAAAGATAGAGGAGCA 1590982 28 100.0 33 ............................ CGATATTGAAGGGGTGAATGGTATTAAGCAGCT 1590921 28 100.0 32 ............................ AGTGACATACTACCCCCTACAACTTCTTCTTC 1590861 28 100.0 32 ............................ TGTGTGTTGTTGTTGTTAATCTTATGATAAGC 1590801 28 100.0 32 ............................ GAGAGTGGGACACTACATAGAGCTAACAAAAG 1590741 28 100.0 32 ............................ TTAGTTACTCATCTAGTCAGACCTCAGACCCA 1590681 28 100.0 32 ............................ AATAGCCTCCTCCATGATTGTCGTTCTTAGTG 1590621 28 100.0 32 ............................ ACTGGTAGCGCGCCAATACTCTGTATTTTTCT 1590561 28 100.0 32 ............................ TCCATAAGGTCGCTTGTCGCAACCATTATTCT 1590501 28 100.0 32 ............................ TTATCCGTCACCTTCACCATGTCGTAATGCAC 1590441 28 100.0 32 ............................ GTCGGAGCTTAGGACGGGGGAGAGTATCGTGT 1590381 28 100.0 32 ............................ ACTACGGGAAATACCCAAATATCCTGCGGATT 1590321 28 100.0 32 ............................ ATATCCTCTACTGTTAATTAGTTGATTATTTA 1590261 28 100.0 32 ............................ GCGACCAATCAGGGACACTCGTATCACAGAAG 1590201 28 100.0 32 ............................ TGTTAGCTCACCGAAGCTACCCAGTGCACCAT 1590141 28 100.0 32 ............................ ACTACAAGCCAGCGACGACAGTTATAATTTTA 1590081 28 100.0 32 ............................ AAATTAATAAAATTGTTGTGCGATTGCGTGAG 1590021 28 100.0 32 ............................ ATTACCCCTACAAAACGCATAACATTGTTAAA 1589961 28 100.0 33 ............................ CAGGAAAAAAACCGAAGTATTTAAGAGATTTCA 1589900 28 100.0 32 ............................ ATTTACCCCTTCAATATCGGTTGTGTATTTCA 1589840 28 100.0 32 ............................ CGTTGAAGAAACCTCCACGCCTTTAAAATCAA 1589780 28 100.0 32 ............................ TTTGAAAACCCGGTATTTTGATTTTTCTCAAC 1589720 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 1589660 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 1589600 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 1589540 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 1589480 28 100.0 32 ............................ AATCTTGCCGAGAAAATCGCCGAAAGAGAAAG 1589420 28 100.0 32 ............................ GATCGATATGTTTTTAAATACAGTTTGCGGAA 1589360 28 100.0 33 ............................ TTGATAGCCGTGAAAGCTACGATCACCTTTTTT 1589299 28 100.0 32 ............................ ACTTCCGCGAATTTCGTTAAAAAACGACCGCA 1589239 28 100.0 32 ............................ GCAACAAACGGTTATTACGAAGAAGAGATGGA 1589179 28 100.0 32 ............................ TTTGACAGCAGTCGAAGACGAAAGCGGCGATC 1589119 28 100.0 32 ............................ GAGCGTTATCGACCGTCGATGACAAAAGACAG 1589059 28 100.0 32 ............................ AATGATAGTTACTAACATTAAGCCGATTGCAC 1588999 28 100.0 32 ............................ TTGCCACACAATCGGTCGAGTGAGTTCATTTG 1588939 28 100.0 32 ............................ AGCTGATCAAAAGTTAAATTCTTGTCATCTTC 1588879 28 100.0 32 ............................ GAATGAGGCACCTGAATCTGGCAGTTCTAAAC 1588819 28 100.0 32 ............................ TCCCACCTATCCGCATCCTCAGGCCACTCACC 1588759 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 1588699 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 1588639 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 1588579 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 1588519 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 1588459 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 1588399 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 53 28 99.4 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //