Array 1 48-261 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIHO010000026.1 Escherichia coli strain B-18 ESC_QB0117AA_AS_NODE_123_length_14052_cv_7.421544, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 48 29 100.0 34 ............................. GGGGCGCATTAACAGAGAGAAAAACGCATAGGCC 111 29 100.0 32 ............................. TCGCTATTGCCGGTAGTGTCGCTGATAGACTC 172 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 233 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================== ================== 4 29 99.2 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGCGGGGATAAACCGTTGTCGGGGATCTGTTCAAACTGACTCATTAGG # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCTTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17736-16387 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIHO010000262.1 Escherichia coli strain B-18 ESC_QB0117AA_AS_NODE_45_length_33025_cv_8.232355, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17735 28 100.0 32 ............................ GTATTGCCTGACTATTTCACGCAACAGATCGC 17675 28 100.0 32 ............................ TCTAATATTTCAAAACCCCAACGACTGCCAAT 17615 28 100.0 32 ............................ ACAGGCACCCGGCTGATGTTCGTAGGCGACAT 17555 28 100.0 32 ............................ TGGTGGCCGGAAGAAGCTGATCACATCATGTT 17495 28 100.0 32 ............................ CACATTATGAATCACACGATGGCGATGCGTGA 17435 28 100.0 32 ............................ ATCACATTTAATTCCGTGTTTCGTTTTGAACA 17375 28 100.0 32 ............................ GAACTCCCTTTCGTGGGCGGTACGTAATGATG 17315 28 100.0 32 ............................ GGAAAGTTAAGCGCCAGCGCGGCGTTGTGGGG 17255 28 100.0 32 ............................ GGAATCGCCCCTCGCTCTCAATCCAGAATTTT 17195 28 100.0 32 ............................ AGTCCGCGCGATTTCATTGATTAACCGGAACC 17135 28 100.0 32 ............................ GGGAACAACAGGACACAATCCGCAACGGTGAC 17075 28 100.0 32 ............................ TCAGCGACGAGCTGCGCCGGTGGGCACGTAAT 17015 28 100.0 33 ............................ GGTACTAAATGCGATGATCACCCCGAGCGTGAT 16954 28 100.0 32 ............................ CACCGGGCCTGCTCAGTCGCGCCGACGTCCTG 16894 28 100.0 32 ............................ AGTTGAGTAGCGTGGGACGCGATACGCCCAGC 16834 28 100.0 32 ............................ ATCCTGATAATTCAAGTCTGTGATTACCAGTA 16774 28 100.0 32 ............................ TACTTGTGCTGAAGCACTGGCATCCAGAATGC 16714 28 100.0 32 ............................ AGTACGCTATTACGCTACCCTACCCAAAACAC 16654 28 100.0 32 ............................ ATGTTTATTCCCTGATTAATGACGCCGTGTTA 16594 28 100.0 32 ............................ ACATCGTTTACTCCGTTCGCCGCGTTAATGCG 16534 28 100.0 32 ............................ ACATTGATCAGGTTATTTCAAATACGCCCGGC 16474 28 96.4 32 ..........................G. AGCAAGCTGTCTCGCCCCTTCGGGCTTCCAGC 16414 28 85.7 0 ..G.................T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGTGCTCCGTGACTGACACACACAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATGAAGAAATACCAAATCGACCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTATTTATTTCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAACTTTTAACAATAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCACAGACGCAAAAAAGGTCGGCTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 27667-26797 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIHO010000262.1 Escherichia coli strain B-18 ESC_QB0117AA_AS_NODE_45_length_33025_cv_8.232355, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 27666 28 100.0 32 ............................ ACATCATGAACGCGCAGCAATATGCCGCAATT 27606 28 100.0 32 ............................ CGGCAGAAAAACCGGTCGCGCTAATGGAGAAA 27546 28 100.0 32 ............................ GCCGCAACTCACAATAACAGAATCACAAATTA 27486 28 100.0 32 ............................ TGCCAGATATTTCAGATCATGAACGGTTGCGC 27426 28 100.0 32 ............................ AGGAAATTTCCGGCGACTAACGAAACAGGTTG 27366 28 100.0 32 ............................ GTCATCGGTATCGTCACGCGCAAGGGATTCAA 27306 28 100.0 32 ............................ GTTGTAATTTTCGTACCCGGCGCGATCGCAAT 27246 28 100.0 32 ............................ AATCGTAGGGCACACCCTTACGGCAGTTAAAA 27186 28 100.0 32 ............................ AATCAGCCCGATCACTGTGCTGCGCCCCGCTC 27126 28 96.4 32 ......................C..... TCATTGGAATACATGAGTTGCGCCCATTTTGT 27066 28 100.0 32 ............................ TGGCATGCAATCACTACAGCTATTAATTTCTA 27006 28 96.4 32 .................T.......... TGAACGCGATCCGGGCGATTCGGGAGTTTTCG 26946 28 100.0 32 ............................ TTCACCGAGTGGGTGCTCGTGCTGAATGAACT 26886 28 92.9 32 ..................C.T....... CACATATACGCGAACGTCATTTTGCAGTAGCA 26826 28 85.7 0 ....................T...C.CT | C,A [26800,26803] ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTGACGGTTGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTTAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTGTTTATGGGGTGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGGTAAGTTGTTGATAATTAGTGCTGCGGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGGCATTTGGTCATGCCATGACACTCTCAACTTCAAACCATTAGCTTCAGCACACAATAACAATCGTAATAATTGCGACAGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTTCAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGTACGCCGCTGTATTCAGCGAATGAAGTGGATGTCGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 17155-18342 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIHO010000301.1 Escherichia coli strain B-18 ESC_QB0117AA_AS_NODE_80_length_21310_cv_7.744229, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17155 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 17216 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 17277 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 17338 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 17399 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 17460 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 17521 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 17582 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 17643 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 17704 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 17765 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 17826 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 17887 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 17948 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 18009 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 18070 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 18131 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 18192 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 18253 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 18314 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 532-14 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEIHO010000036.1 Escherichia coli strain B-18 ESC_QB0117AA_AS_NODE_132_length_13166_cv_8.264974, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 531 29 100.0 32 ............................. GCATTCAATATTCGGTTTTTAACTGCGGATTC 470 29 100.0 32 ............................. AACCCGCGCCGTCGGCTATAACATCTCTGAAA 409 29 100.0 32 ............................. ATTTTTGCGGTATTCTCCCAGCCGCCCAGCAG 348 29 100.0 32 ............................. GTCCATGGCCTGACGAAGCTCGTAATATTTTG 287 29 100.0 32 ............................. ACGACCAAATGATCTACGCGTATTGCCACCTC 226 29 100.0 32 ............................. TTAACGTCTGGATCCTGTGTGCCATGGACCGT 165 29 100.0 33 ............................. CCAAAAATGCGCCCCATGCGCACAAATTCGCGC 103 29 96.6 32 ............................C CCAGCGCCAGACGGGAACACAATTTTAAAGCC 42 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GTTGTCGGGGATCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //