Array 1 77233-75105 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAHJ01000008.1 Pseudomonas sp. Hp2 Scaffold8_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 77232 28 100.0 32 ............................ TGCCAGACGGAGTTACAGATGATCAGATTGCA 77172 28 100.0 32 ............................ ACCTTCTCCGCCATTCCCTCCAGCAGAAGGTA 77112 28 100.0 32 ............................ ATCCGGCACGGCAGCACCCGAATCAGCAATTG 77052 28 100.0 32 ............................ ACGGTAAGCGCCTCCATCACCTTCGCGCTCAT 76992 28 100.0 32 ............................ ACGGGCATTCATGGCGTGGGCCTGGGCGCGGA 76932 28 100.0 32 ............................ TTGCCAGCCGGCGGCGTCGGAATGTCAGTTGC 76872 28 100.0 32 ............................ AACTCCGCAAGTTGCTTCTGCTGCTCCTCGGT 76812 28 100.0 32 ............................ GAACACGTAAGCGACCATATCGGCCACGCTCA 76752 28 100.0 32 ............................ TGCGGTCCCATCTCATTCTCGGCCGTACAGCA 76692 28 100.0 32 ............................ GTTAATCTGCTGCATCATCAGGAAGTCGCCGA 76632 28 100.0 32 ............................ ACGCGGTATCGAAAACAAGGGCTTAGATAAGG 76572 28 100.0 32 ............................ TGCCGGATGCTCAGGCCGTGCGGGCGTGTGCC A [76551] 76511 28 100.0 32 ............................ ATCTGGCAGCGCCAGCTGACCGCAGATGAACG 76451 28 100.0 32 ............................ AACGCGCGCGTCAAGTTCAGCCTTGTCAGCCT 76391 28 100.0 32 ............................ TTCACGACAATGTACATGTCCCAGTTGTGCCA 76331 28 100.0 32 ............................ AATGACTCATAGTACCATCAGCATTCTCAATT 76271 28 100.0 32 ............................ TCCCCGGTGCGTTGCAACGTGCCCTCGGCATT 76211 28 100.0 32 ............................ GTAGCGGGGCTCGTCCGGCAGCTGATCGACAG 76151 28 100.0 32 ............................ ATTGGTTGAACGAGATGTCGCGCTGATCGGCC 76091 28 100.0 32 ............................ TGGACGATGAAGCGAAACGCGGCGCGCAAGGC 76031 28 100.0 32 ............................ GAGTGCTTCCGCGTGCTTCGGCCGGAAGGCGT 75971 28 100.0 32 ............................ TCCCGTTCTTCCTGCAATGCGGGGATATGGAG 75911 28 100.0 32 ............................ AGCAAGTGCGACGTAGCGTCAACGAACGCCGA 75851 28 100.0 32 ............................ ATGCCGATGTGGATGCGCTATCTCATTGCCGG 75791 28 100.0 32 ............................ AGCCGCTGCGGGTCGCAAGCGCCCCGCACAGC 75731 28 100.0 32 ............................ TGGTCGTCGGCGCGCAGTACCGCTTTGCCCCC 75671 28 100.0 32 ............................ TGAGCCATGGCGCTCCACATCAACTACTCACG 75611 28 100.0 32 ............................ GCAGTGGGCAAGATGACCAAGACCGAAGGCGA 75551 28 100.0 32 ............................ ATACGCTGCCAGAGCTGGGAGGACGCCTTTTC 75491 28 100.0 32 ............................ GTCAGCCAGTCCCAGGCCCAGCGCAGATCCGG 75431 28 100.0 32 ............................ TTCCAGGATCGGGTGTGTTCTGGAATCCGGCC 75371 28 100.0 32 ............................ ATGAGCGACACCAAGACCCGGACCGTCATGGT 75311 28 100.0 32 ............................ GGTGCAGGACATCGAGGTCGAGGCGATGCGCG 75251 28 100.0 32 ............................ TCGGCCGCGGCAACGTAGCCCGTTTCTGCGTC 75191 28 92.9 32 ....A....................G.. CATAAGACGCCCTCGGCGATCATGCAGAGCTT 75131 27 82.1 0 ......C..T.-..G............G | ========== ====== ====== ====== ============================ ================================ ================== 36 28 99.3 32 GTTTGCTGCCGAGTAGGCAGCTCAGAAA # Left flank : CGTTCTGGAGCGGTTGATGGCCGAGGATTGGCTCAAGGGCGTCCGCGATCATGTCCGTGCAAGCGGCGTCCAGCCCGTTCCCGAAGGCGTCCCCTTTCGCACCGTGCAGCGACGCCAGTTCCAGACCAACGTAGAGCGGCTGCGTCGGCGCCGCATGCGCCGCAAGGGGGAAACTGCCGAACAGGCCGCGCGGGCGATTCCCGACTCGGCAAAGGACCGGCCGGGCCTGCCTTATGTGCAACTGCGCAGTCGCAGCACCGGACAGCCTTTTTGCATGTTCCTGGCCTTGGGGCCATTGCGCCATGAAGCCGTACCGGGCTCCTTCAACAGCTATGGCTTGAGCGGCTTGGCTACCGTTCCCTGGTTCTGACCCTTTTCCAGAGCCCAGGCTTCTGCTCTTTTAAAATCAACCATTTGCGCGCGGCGCCTTGAAAAGGGTGCCGCGTGCCCATTTTTTGAATTTTGCTTTACAAACAGTGCTTTAGAGGGAAATTCATCTA # Right flank : CGAATCCATCGGAGATTCCCTACCGGCCCTCAGGATCTTTTCTTACCTACTACTCCCACCTATACGGGAATGAAGGCACTCCATGACTCTAAAGAGTGAACAGATTCTTAGCCCACAATCACACGGACGATCAGAAATCCCTCCACTTGCCGATGGAAACCGAGAGGCGGCTCGAGCCCGGGCCCTTGGGTGCCAAGGAGCCGGCGATGGTGGACCAGACGCCTGCATTTGCCGCATAGGCAGTCAAAAGCCAAGCAGATCTAGGCGTTGAAGGACCCGAGCGTTACTGCCGTGCAGGTAGCTCAGAGAGTGCCGGCCAGTGCCTGGTCGGCCGGCACGATCTCCTGCCGCGCAGGCAGCAGCGCCAGGGTCGCGTAGCGATACGCCCCGGGTTGATCGCCCTACCCTGCATCCTGCATAGCCCTGGCTGATGGTGCGCATCCCAAACCGGATGTTGGCCGGCCCCCTCACGCAGCCTGGAACGCCGAGGCCTCCTGCGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGAGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGAGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2981-193 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAHJ01000006.1 Pseudomonas sp. Hp2 Scaffold6_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2980 28 100.0 32 ............................ ACGCAGGTCGTCCTGCAGTGCCTGCGGCCGCT 2920 28 100.0 32 ............................ TGCCGCGCCTGGTCGACCAGGTGCGTGGGCAA 2860 28 100.0 32 ............................ CTCGTCATCTGGCTCGCTTTCGACCAATAGCC 2800 28 100.0 32 ............................ TGCCGGACAGCCAGGGATAACGTTCTACAACG 2740 28 100.0 32 ............................ ATCACGGTCAGCACCGCACCACCGATGGCGGC 2680 28 100.0 32 ............................ TGTGACGAGCGCCAGCGAGACACAGCCGAGGC 2620 28 100.0 32 ............................ TGGACGGACCACAGCAGGCCGCGCATGCGCTC 2560 28 100.0 32 ............................ GCCACCGTTACCGCGAAACTCGATCACATCGA 2500 28 100.0 32 ............................ CGTCGGCGCCACAAGGTCACGGCCGGCGAGCC 2440 28 100.0 32 ............................ GAATTGGAAGCGCTCTATCGGTCCAATCGCGA 2380 28 100.0 32 ............................ AGCCCGACGCGCTGGTGGAACCACACGGCCGT 2320 28 100.0 32 ............................ TCCAGCGATTTCGGTGCTGGGCCAGACGATCA 2260 28 100.0 32 ............................ GTACCGGCTTGCGTGTTGAGGAAATCGACCAT 2200 28 100.0 32 ............................ ATTTCTTGGGCCTGCATCCGGTTGAACAGCTT 2140 28 100.0 32 ............................ GTCGCCGTCGCGCTTGCACGTGCCGTCTTTGC 2080 28 100.0 32 ............................ AGTGCAGATCGGCACACGATCACATGTACCGC 2020 28 100.0 32 ............................ ATCGCCCCCACCATCGCCGCCGCCACCCCCAG 1960 28 100.0 32 ............................ GACCAGCTGGACATGTTCCGCGAGCAGCCGCA 1900 28 100.0 32 ............................ AATTCGGCGGCGTGTTCGAACGACGGATGCCG 1840 28 100.0 32 ............................ ATGACACTAAGGTCGTTACTGAGAAGGCCGTT 1780 28 100.0 32 ............................ TAACAGCGAGGGTCGCCGCCGTGGCAGACATC 1720 28 100.0 32 ............................ TCCTTGTTGCGACCTTGCGCGTCCTGCCCCTC 1660 28 100.0 32 ............................ AAATCGCGGCCGGCGAGTCGCCAGCCACTCCA 1600 28 100.0 32 ............................ ATAGCGAAGTTCGCATAATGTATAGAAGGCAA 1540 28 100.0 32 ............................ AAAGGTTGAGAGGGCAGGGCGGGGCGACCCGC 1480 28 100.0 32 ............................ GTGTCAACCCAGAGGCAAACATGAGCGCAGCG 1420 28 100.0 32 ............................ GTCCGGTGGCTGGCAGCGCTGCCGCGAGCAGT 1360 28 100.0 32 ............................ GCGCAGCGGCAAGAGCTACGAGACCGTCAAGT 1300 28 100.0 32 ............................ ATCGCCACTCCCATCACCATCGCCGTCACCAT 1240 28 100.0 32 ............................ AAGAGCACCACGCCATTCAATTGCGAGGCGTA 1180 28 100.0 32 ............................ TGGTCAACGTGATCATCCATGCGATTCCATCG 1120 28 100.0 32 ............................ TCATCGTCCCCGTTCGGATCCGTAAAGAACGA 1060 28 100.0 33 ............................ AAGAGCACCACGCCATTCAATTGCGAGGCATAC 999 28 100.0 32 ............................ GATGGCATCCACCGGCCACGCCGTAGCAATAA 939 28 100.0 32 ............................ ACCACTGGCGCGGCGACATTGCGAATGTCACC 879 28 100.0 32 ............................ ATTGCGAGACGGAGAACGCTGCATCCAGGGCC 819 28 100.0 32 ............................ TGCAGGAGGGCTTGGCTACCGCGCTGGATGAT 759 28 96.4 33 ..........A................. AAGTAGTTCCCGCATTAGCCCCCGAGTATCCAT 698 28 100.0 32 ............................ ATTTGGAAACCGCCTGTCGATGAACGCCGAAT 638 28 100.0 32 ............................ GTGCGGGCTTACCAGGTAGTTGCCGGCAACAC 578 28 100.0 31 ............................ TACAAGCGGCGGTTCGGGTGCTGGGTCCGGG 519 28 100.0 32 ............................ ACTCGTCGTAGCAGAACGCGCCGTAGCGCCGC 459 28 100.0 32 ............................ GGCGCACGGATGGGCTGGTAGCCGAGCGCCTT 399 28 100.0 32 ............................ TCATCGTCGAAGCCAAGCTCGTCCTGCACATC 339 28 100.0 32 ............................ ACGTCCTCAGCGTCACGCCGATCTGCTGTCGA 279 27 96.4 32 ..............-............. TTCCAGTCCCGGCGGAAGTTTGACGGGTCCTT 220 28 92.9 0 .....................C...C.. | ========== ====== ====== ====== ============================ ================================= ================== 47 28 99.7 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : CGTCATCCGCTGGAAGGCCGACCAGCTCGACGCGGTGATCGACCAGATCAACGCCACCGGCTATGGCCTGACCCTCGGCATCCACTCCCGCATCGACGAGACCGTCGAGCGCATCGCCAGCCGGGTCGCGGTCGGCAACGTCTACGTCAACCGCAACCAGATCGGCGCCGTGGTCGGCGTCCAACCGTTCGGCGGCCAGGGCCTGTCCGGCACCGGTCCCAAGGCCGGCGGCCCGCACTACCTGCAGCGCTTCGCCACCGAAAAGGTCGTCACCATCAACACCACCGCGGCCGGCGGCAACGCCTCCCTGCTCACGCTGGGCGACTGAAGATCCCACCGCCGACATCCAGGGGCGGGACCACCATCCCGCCCCTTTTTTGCGCCGTGCTTTTGTACCTCAGGGAATCAACAACTTACCGAGGCCATCCGCAAAAGGGTTCTCGCGCTCCCGACCCCTTCAAAGCTAAGATCCACAAGGTCCTGGCAGCAATGACGCTCTA # Right flank : ACCGCGGCTCGGCATCAGGCGCGAGATGTGTCTCTGGCACGCTCTGCCATGTAGGTGACACGCGACCTGCGCGAAGTGTTTTCAATATTAAAGTGCGGGAGGGGTTGGTGCTGTTTTTGTTTTGCGCAAAGAACAACCCCCCAGCTTTAGGCTGGGGGGTTGTGGGGTAAAGCCCCTGGCGATGACCTACTCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 215840-217578 **** Predicted by CRISPRDetect 2.4 *** >NZ_VAHJ01000004.1 Pseudomonas sp. Hp2 Scaffold4_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 215840 29 100.0 32 ............................. GGCGAGACGGTGACCATGACCAGCTACTGGCA 215901 29 100.0 32 ............................. CCGCGCAGACCACCAGCGGCAGCGATGCAGCG 215962 29 100.0 32 ............................. CTGGAGACGGCCGGGCGGCTGCGCAGCATCAT 216023 29 100.0 32 ............................. GTGGTCAACATGATCGACTCCGGCGACTTCGT 216084 29 100.0 32 ............................. ATAGACTCCATTAATGGTGCTGATGGTGCCAG 216145 29 100.0 32 ............................. CCTGCGCCGCCGCCGCCAGTCGTGTCGGCCGC 216206 29 100.0 32 ............................. TCGATCTGCTCGACGACATCGGGCGCCGGAAG 216267 29 100.0 32 ............................. TTTAGTTGGATGGATTTCGCCACACTCCGGCG 216328 29 100.0 32 ............................. GGAGAAACAGGATGAGCACTGCTAAGCACACG 216389 29 100.0 32 ............................. CGGTCGAACTCGCCAGAGGCCTGCATCCGCTC 216450 29 100.0 33 ............................. CGATGAAGCAATTGGGCCAGGAACGCCGGGCTC 216512 29 100.0 32 ............................. AATCGATTCCAGACGTAGGCATTACAGCGGGC 216573 29 100.0 32 ............................. GTGCGATTCACTAAACTGCGAGGCTTCATCGA 216634 29 100.0 32 ............................. AGTTTTAGGCCGGAAAAAGGCCGAAAAATCAA 216695 29 100.0 32 ............................. GAGTTCCTGCGCTCGAACCCGAACTGGCTGGA 216756 29 100.0 32 ............................. ATGCTGACCTTGTCCGTGATTTTGGCGTCAGC 216817 29 96.6 33 ................G............ GGGCGGGTAATCAGCCCCGTGCAATCTGTTTCC 216879 29 100.0 32 ............................. CTATCGCCCTCCCGGACCACGTCGGCTCGCGC 216940 29 100.0 32 ............................. CTGTTGGCGGAGTTGGCTGCTCGTGTGGCCGC 217001 29 100.0 32 ............................. TGTCTGCGTCAGTTCCGTGACTGGGACGACAA 217062 29 100.0 32 ............................. ACCGGTCTTCGCGGCATCACCGACGCCGAGAT 217123 29 100.0 32 ............................. CGGCCGTCCTCAGTTCGGATGTACGGGCCATC 217184 29 100.0 32 ............................. GTGACAATAGAGCCCTTGGTGATGGTTCCGGT 217245 29 100.0 32 ............................. AGGGCCCGGCACCCGCTGACGTGGGCGGCGCT 217306 29 100.0 32 ............................. TCCGGCTTCCAGTTCTCGTGCCCTGGGCCGCC 217367 28 96.6 32 ...-......................... CCACACCGAACGGAGCGCACGCATGGAAGACA 217427 29 100.0 33 ............................. TTTGGTTCAACGGAATGCCGGAGGTGCGGTGAT 217489 29 100.0 32 ............................. ACGGGTAGCATCTCGGGTAGGCTCTCCGGCCA 217550 29 89.7 0 .....................G...GT.. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.4 32 GTGTTCCCCGCGCATGCGGGGATGAACCG # Left flank : CTTGGCCGAATTATCCCACTGATTGAAGACGTGTTGGCCGCTGGCGGTATTTCTCCGCCAGTGGCGCCGCCCGAGTCCGTACCCCCCGCCATTCCCAACCCCGACAGCCTGGGCGATTCTGGACATCGGAGTCGTTGATGACTTTCTTGGTCGTTGTCACTGAGAACGTTCCGCCACGTTTGCGTGGAAGGCTGGCGATCTGGCTGCTGGAAGTGCGCGCAGGCGTGTATGTCGGCGATGTTTCAAAACGTGTCAGAGAGATGATCTGGCAGCAGCTGGAAGCAGGTTATGAAGACGGCAATGTAGTGATGGCTTGGGCTAGCACAAGCGAGTCCGGTTTTGACTTCCAGACTCTGGGCGCGAACCGTCGCATGCCGATCGATTACGATGGGCTAAGGCTAGTGGCTTTTGAGCCACAGGCTGCCTCCGATCTTTGACAAAAAGCTGGTAGCTTGTTGACCTTCGTATTTTTTCTTTTGGGTCAATGGGTTGCATTTGGT # Right flank : GCATGAGGAGCTCCTGCAGACTCAATCAGAGTCGAGTGTCGTCATGTCAATAATTCAACAAAAGGGAAGATGTCGAGGAGTCGATCAATGCTTTGATTGAGCCTCGGGTTGACACCGCATCGTTAAGCCCGCGTCGAAATCCCGCCTGGACAGATGCTCCTTCCGTCACGTCACGGTGCGTACACCCTCGGGACAATGCCATCGGTTCCAGGCGCCTGTGCCGCATGACTTCGATCAACGTCCTCACCGTCAACGTGCACAAGGGATTCAACCTGCTCGGCCGGCGTTTCGTGCTGCCCGAGCTGCGCGAGGCGTTGCGCGCGGTGTCGGCCGAGATGGTGTTCCTGCAGGAGGTGCTGGGCGAACACGCGCGACATGCGCGGCGCCATGCCAACTGGCCGGCCGAGCCGCAGTACGAGTTCCTGGCCGATACCTTGTGGCCGCAGTTCGCCTACGGCCGCAACGCGATCTACCCGCATGGCCACCATGGCAACGCGATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //