Array 1 7484-6856 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADOJ01000003.1 Actinobacillus pleuropneumoniae serovar 10 str. D13039 contig00040, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7483 28 100.0 32 ............................ TAATATCCAATTTGCAATTGCAGAGGCGCAAA 7423 28 100.0 32 ............................ ACTTTAAAAACTCTTCAATTGTTACTTTTGGA 7363 28 100.0 32 ............................ TAAATCCAAGCCTCTAATTTATCACGAGATTG 7303 28 100.0 32 ............................ TCGGAAGATTCAACATCAGACTATTTTAAATA 7243 28 100.0 32 ............................ TTAAAAATATGCTTCATCGCCGCATTGATTAG 7183 28 100.0 32 ............................ ACGCATAAAATCCTGCTTTGTTACACGAATCG 7123 28 100.0 32 ............................ TGCAGAGCTCTTTATTGGCTTAAGTGTGTGCT 7063 28 100.0 32 ............................ TGCTCTACATTGTAAAATGTTTAATTAAAAAT 7003 28 100.0 32 ............................ TTTTGCCTGCGATGCTGGTTTCGGTTCGATAC 6943 28 100.0 33 ............................ CTGAGTTTTGGACTGCTTTATTGGTCTATTTAC 6882 27 89.3 0 .....................C-.C... | ========== ====== ====== ====== ============================ ================================= ================== 11 28 99.0 32 CTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AAAAGTGCAATTAACTGCAGAGGGCTTACAAGACTATGCTCTTATTACATCGGTAACCCCTATTCCGGAAGAGATAGCCGAGCATCGCCGTTACCAAAGAGTGCATAGAAAAGGTCAAAGTGCTATTCGCCGTACCGAGAAATTCTTAGTTCAACAAGGAAAATGGACTGAAGAAATTCGCCAAGAGATGTTAATACATCAGCAGAATCAAAAAGTATTTCCGTACGTAAAACTCAAGAGTGGTAGCACTAAACAACATTTTGTATTAGCGATACGACAGCTTCGTTTAGCAGAACCCTCTTTCGGCTTATTTAACACGTATGGATTAAGCAAAATAGCAACCGTCCCACATTTCTAACCTATATTTATAACCCTTTTTTCCAGAGAATTTATTTTTCCTTTAGAAACAAAGGGTTATAAAAACCTTTCAAAAAAGGGATTTTTTGATTAAAAGCTCTTTAACAACTTGGTATATCTAACATTCTAAAGTAAAATAACGA # Right flank : TCAACAGTATTCCATAAATAACATCGGAGAAAATAATATGAAAAAAACACCTTATATTCCGTCTTCGGATTTAAAGACGATTTTACATTCTAAGCGGGCGAATATTTATTACTTAGAACACTGCCGAATATTATTAAACGGCGGGCGTGTAGAATATGTTACCGATAAAGGCAATGAATCTCTCTATTGGAATATTCCTATTGCCAATACTATCTGTTTACTATTGGGAAGTGGTACTTCAATAACTCAAGCGGCAATGCGAGAACTGTCAAAAGCAGGGGTTATGGTCGGTTTCTGTAGTGGAGGCGGTACGCCGCTATTTAATGGGACGGAAGCAGAGATCGGTTGTGATTTTTTTAGTCCTCAAAGTGAATATCGTCCGGTCGAATATCTACAACAATGGTGTCGATTTTGGTTTGATGATAACAAGCGGTTAAATTCGGCAAAAACTTTACAATTGGCACGGTTACAATTACTGCTTCGAACTTGGAATAAGTTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 96236-95934 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADOJ01000007.1 Actinobacillus pleuropneumoniae serovar 10 str. D13039 contig00022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 96235 36 100.0 31 .................................... TACTTTACGGTAATTAATGTATCGTTTAGGT T [96218] 96167 36 100.0 30 .................................... CACTCAAGAAGATAATTATTATTTCTTAGG 96101 36 100.0 30 .................................... TCGTTTTGTGATTTTACTAACAACAATTTA 96035 36 100.0 30 .................................... CCTAACTGATGTTAATACAGTCAATGCTTT 95969 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 100.0 30 GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Left flank : CGTT # Right flank : AGGGGCGCTAAAAAGCCTTGAGCCGTAAGGGTTCAAGGCTTTTTTCTTACTAAAAAAATCGGCATAGTAGACAAAAAGTTTGGTGTTTTACAAAACTATGCCTCTATTGGACAAAAGGGTTGGTAATGATTATTTTTAGATCATTATTACCGACTCTTTTTATTTAAAAAGTCCTGTATAAACAATCTTTTATGTTTTCTCGTTAAACCACTATGCGGGCGTAATTTATCTTTCAGTTCTTTAAATAGCCCTTCTATCCTATTTGTCGTCTTTTCAATATTTAATTCCGAATACATTTCATAAGTAAATAGATATTCAAAATATCGTTTAATACTGGCATAAGCACTTCTTACATTTCGATGTTTATAAGGATATTTCCCTTTTTCATTCAGTTTATCTGACCGCTCATTTAAAAAATCCTGATGTTTTATTTTCCAATCATGTAGGCGTAGGTAAAATTCATTTTTTGTACTTGTTTTTAACGTTTTTATTATCGTTTT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 228-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADOJ01000039.1 Actinobacillus pleuropneumoniae serovar 10 str. D13039 contig00021, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 227 36 97.2 30 ..C................................. ATAATAGTGATACGCATATTGTCACTGATA 161 36 100.0 30 .................................... TAAGGAAACGATGTAATGGCATTAGATCTA 95 36 100.0 30 .................................... TCTCAATCATTAATTAAATTCCTAAGCTCA 29 29 80.6 0 .............................------- | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 94.4 30 GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Left flank : ATTTACATTAGTTTGTGCAACATTAGCTCATACCGGTTTTGCAAATTCTGCGGAAAATTCGACCGCTTATACGGAATACGCCAAATACAAAATCTCCGCTACCGATATGAAAATCTTGGTTCGCCAGTTAAATAATATTGAACAATGCCTTTTCCCCGATCTTGCAAAACCGAATTACCAAAAAATCTATGACAATTGGTCTGTTGCCGAAAGCATGACGATGCTCTATTTCCAGCAAAATTTATTAAAAGAGTTAATTGGCGAACACAATGCTCAATTGATCGAAAAAGACGAATCCTCACGTCTTTACTTTGAGCAAATGCATGAAAAATATAACCACCAAAAAGCTAATGTTGATAAATATCGCTGCGAAGAGTTCAAACCAATCTACGCTCAAATCAAACAGCAAATTGAATACTCAATACCACAGGTGTATAAATAAGCTTTCTTAGTTATTTCACATAGCTACAATTCGACTCTGGTACACGACTTCGTCAGGA # Right flank : G # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //