Array 1 35069-32459 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRL010000001.1 Lactobacillus sp. W8093 NODE_7_length_270813_cov_184.505851, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 35068 36 100.0 30 .................................... AAAAACGAGAAACTGATAGTTGAAAATGTA 35002 36 100.0 30 .................................... AGCTCAGAAAGATTACCATCAATTATTGAA 34936 36 100.0 30 .................................... ATTAGTTAGTCAATTTTTGCATTGACCAAC 34870 36 100.0 30 .................................... TATGCCTCTAATAATTCATTAGCTTTATTA 34804 36 100.0 30 .................................... ATAATGAGAATGACGAACTGGTAAATAGTT 34738 36 100.0 30 .................................... GAAAGTGTGAATTAAAAATGTTATACACAA 34672 36 100.0 30 .................................... CATTTAATTCCTCCATTTTCCTTCCAATTA 34606 36 100.0 30 .................................... AGAAGGTCAAGGCATATCGGCTCGCTGACA 34540 36 100.0 30 .................................... CCTTTCGGTTTAATTTCTTCAACATTGCCC 34474 36 100.0 30 .................................... CTTTCCAAATTAATTTGAATAAAGTTTCAA 34408 36 100.0 30 .................................... CGACTAAATACGAGTGGGATGCTAAAAATC 34342 36 100.0 30 .................................... CGTGTTCCTTAAGGTACTCGTAGTGCTTAA 34276 36 100.0 30 .................................... CACTATTTGACATTTACGCAGTTGTGCGGT 34210 36 100.0 30 .................................... ATATAGGATTAGGCGGTTCGCAAGCGTGGG 34144 36 100.0 30 .................................... TCAATCGAATGTAGTTATAGCTAGAACAGG 34078 36 100.0 30 .................................... CTGACAATAGAAAGTTTGATTTGACCATTG 34012 36 100.0 30 .................................... TAGAGTTTGGCAAATATGGCGAACAGATTG 33946 36 100.0 30 .................................... ATTTTATTGATGATTACAATTTAGGTGCAT 33880 36 100.0 30 .................................... TAGCATAGTATTTATTGCTTTCTAGATAAA 33814 36 100.0 30 .................................... AATTTAAATACTTCATTGAATTAGTATCAT 33748 36 100.0 30 .................................... TAAGCAAGTAAATCAAAAGCATGTTCCTTA 33682 36 100.0 30 .................................... TTATTGATAGGTGAATATTTGTTCATCTAT 33616 36 100.0 30 .................................... AAAAGCAAAAAATTAATACGATAGAGCGTC 33550 36 100.0 30 .................................... GGATAATTTTCTATCACATCCATAAAATCA 33484 36 100.0 30 .................................... CTTTAATGCAATGAAAAATCATGTCTTCGG 33418 36 100.0 30 .................................... AGTCAGGACTGTCTTGCCTTTGTAAATCAC 33352 36 100.0 30 .................................... TAAGCACATCACCATCTAGCCTAATACTAT 33286 36 100.0 30 .................................... TAGGAAAACGCTCAAATAATTCTAATGATG 33220 36 100.0 30 .................................... TATGGTCTAACAGATTCAGTGGCCAAAGCG 33154 36 100.0 30 .................................... TGGTTATTTCTCCCAAAGAGTATACTATGT 33088 36 100.0 30 .................................... CCTATCCTGCCAAGGTTAAGCAAGATTTAA 33022 36 100.0 30 .................................... TTTTTGTAATTGGTTTCAGGTTTGCAACCC 32956 36 100.0 30 .................................... GAAGACGTCAACGAATATTATGGAATTGTT 32890 36 100.0 30 .................................... ATTGATATATTGCTCCATGACCACCATTGT 32824 36 100.0 30 .................................... GGTTTCGTATTTACCGTCATTGTGTGTTGT 32758 36 100.0 30 .................................... ATAAAATTCCTGAAGAAAAAAGGGATTCTT 32692 36 100.0 30 .................................... TTAAACGGCCAAGGAGACCAACAATCAAGT 32626 36 100.0 30 .................................... GGACCTTGATGTTCGGACGTCCATTTTGTC 32560 36 94.4 30 ....................A......A........ AAATTAACAGATTTTTGGATAGCTTGTTAT 32494 36 83.3 0 ........................T..T.A..TT.G | ========== ====== ====== ====== ==================================== ============================== ================== 40 36 99.4 30 GTTTTAGATGGTTGTTAGATCAATGATGATTAGAAC # Left flank : GTGGGGATATTACTAAAAAGTATATGCCCCATATTGTAAGTAGTTATCTGAAAAATTTAGACGAAGAAAATCGCAATAAAGTGATTAAGTCTTTTTATAATTTAGAGTCAACCTTGCAGGATTCACTTTTACTTGAAGATTTACCTCTAGCAATCGATTTCGACGAAGACTTAAAAAAGCTTCTTAAATTCGCAGAAATTCATATAGATAATAACATGCTAGTAAATCCTTATGGTATAATAGAAACGGTTTTAAAAATTTACCAAACTTGTAATTTAAAACTAGTTCCTGTTATTTGTAATGTAGCTCATTACTTAGAAGAACAGGAGTGGCAGGAGTTAGCTAGTCTTGTCACGGAAATGAATTTAATTTTGGTTGTAATTGAATTCACCACAAAAGAAAGTTTGACAATATCTAAAGACATACCTTTTTATTATATTGATAAGGATCTAATCGATTGGTATTAGCAGCATTATTAAAATTAGATTATAAAATATCGG # Right flank : TATCATCACGAATAGGCAACAGCAAGTTGAGCAAAGATATCTTGGACGAGTAACGAGTATTTATAAAACAGTGTTAATTGGGGTAAACTCTTTTGGCTTTCTTTTAGGTGGTCTTGTTGCCAAAAAAATAGGTTCAAGATCAGGCATTGGAGTATCAGCAATTGCACTTTTGCTAGTTACCATAATTAGTATTTATTTGCTGGCACCTAAAATAAAGCGTGATAACAAGCCTTAGTAGCAAAAACTTGGGCAAAAAAGAATTTAGAGGTAAGTGATAAACTGTGAAATTTTTATATATGCAGGTGATTTGTTTAAGATGACAGATGTATAAAAGACTATGATTCATAATAATAGCTGTGAAGTTAAGCCTAATTGCCACTTCAGTAAGACGGCTGGCTACAAGTCAGAAGAAAACAGTAGCACACTCAATTTGGATTAATGCGATAATTTCATATCTAGCAGAAAATAAAAGACTAATAAATTGCTTATTACTGCACAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAGATCAATGATGATTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGATGATTGTTAGATCAATGATGATTAGAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 327-2476 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRL010000008.1 Lactobacillus sp. W8093 NODE_19_length_117858_cov_169.094326, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 327 36 100.0 30 .................................... CTATCTTATACTCTTTCATGTAAGCTTCAG 393 36 100.0 30 .................................... TAAATACATCTCGTTTGATAGATACATCTA 459 36 100.0 30 .................................... TTAGATAAGTTGGATTTATACAGCAAATCA 525 36 100.0 30 .................................... TGAGAATTGGTGAAGCGTGTGCTATTCAAA 591 36 100.0 30 .................................... ATTCAGACACAATTTTAGAATAAAAGGAGG 657 36 100.0 30 .................................... CCGTTGGGTTTTCAATACTGCCAAAGGTTG 723 36 100.0 31 .................................... TGTCATGCGCATTATCACCATTTTTGCCCTT 790 36 100.0 30 .................................... TTTATACAACGGTTTAACATCATCTTTCTT 856 36 100.0 30 .................................... CCTTTTGCGACTGAATTAGCTAATAATCAA 922 36 100.0 30 .................................... ATTGATGAATTAGATAATACTAATAATAAC 988 36 100.0 30 .................................... GAGAAACAGTCCTGAGTAATTACACAAAGG 1054 36 100.0 30 .................................... GTATAGCAATGTTTAAACAGTATAATATAG 1120 36 100.0 30 .................................... GCCTTTTGGCTCCTTAATCAACATATGTGA 1186 36 100.0 30 .................................... CCTATAATTCCTAATTCAATTTTTGCTTTC 1252 36 100.0 30 .................................... AACCAAGAAGTAAGTCCATGCCATTGGTCT 1318 36 100.0 30 .................................... TTACGTAAATAATACTCACACCTTAATTTA 1384 36 100.0 30 .................................... ACTTATGATGAACATTCTGTTCTATTACAT 1450 36 100.0 31 .................................... CTAGCTAAGTCAGTAACCGAACCTTTACCTT 1517 36 100.0 30 .................................... ACTACTTTTTAAGAATTGCCAAGCCTTACC 1583 36 100.0 30 .................................... TAGTTGTTAATGCAAAAGAGGCTACGCACT 1649 36 100.0 30 .................................... CCAGAGTCGTTGCTATGAAAGGTCAAGCAA 1715 36 100.0 30 .................................... CCTGAAATGAAGCATAAAAATCAGGATCAG 1781 36 100.0 30 .................................... GAAAAATGACTGATGAATGGCAATTTTACC 1847 36 100.0 30 .................................... AGATATAATAGACAATCTAATAAATGGTTT 1913 36 100.0 30 .................................... GCTTGGTATGGTAGTATGACTTAATCTCTG 1979 36 97.2 30 ..........G......................... CTACGTGTACATGTGTACCTGTTACATATC 2045 36 97.2 30 ..........G......................... TTGCAAGCTAATATTGATAAGCTACCAATT 2111 36 97.2 30 ..........G......................... ATCATGTGCTACCAGTTGAACGCTTTCCAA 2177 36 97.2 30 ..........G......................... GTAACATTTTGATATGAGTTATCGTCTTCG 2243 36 97.2 30 ..........G......................... ATCCTGAAGCATATTCAGATGAAGATATTA 2309 36 97.2 30 ..........G......................... CGTGCCTTGATCTAAATTAATGATGGCGTC 2375 36 97.2 30 ..........G......................... CTAACCAAAACAGATATCTGTACGTTACAC 2441 36 97.2 0 ..........G......................... | ========== ====== ====== ====== ==================================== =============================== ================== 33 36 99.3 30 GTTTTAGATGATTGTTAAATCGATGATGATTAGAAC # Left flank : CACGACTCCGATTAAATATCGGAATCGTGCGTTAGGTCTTGCTTAATAATAAAATGTCTAACTTTTTAGTTGCACTTCAAATCTAGAGGGTTAACTTCAATATTGCAGGCTTTTTTAGTGTCAAAATTTTTAAAAATGTGTTTTTAGCATAAATTCAAGATTTAAACATCTATGCTATAATTTAAGTAAACATTTAATTTCTAGAACTGCATTATCAGGACTAGATTAGCTACCTTTTTCCTGATATTGCTGCAAAAACTGGTCGTGTTTCTAATATTATTTGGTTTAATTCAACCATATTATTAAAATTTGATGATAAAACATCGG # Right flank : CTATATAAGGTTGATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAACCTAACCAAAACAGATATCTGTACGTTACACGTTTTAGATGGTTGTTAAATCGATGATGATTAGAACTATATAAGGTTGATTAGTATCAATCCAAATGTTTTAGATGGTTGTTAAATCGATGATGATTAGAACTTTTAGACTTGGTAGGTGGTCAAGGTGTGGGTTTTAGATGGTTGTTAAATCGATGATGATTAGAACATTAATATATTGACCACCACCCGCAAGCACCCGCAAGCCAGTTTTAGATGGTTGTTAAATCGATGATGATTAGAACTAATTATCGCCTATTTCCTGCATTCTTTCGGTTTTAGATGGTTGTTAAATCGATGATGATTAGAACTGATTGACTGCCAACCTCTATCCATTGTGAGTTTTAGATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGATTGTTAAATCGATGATGATTAGAAC # Alternate repeat : GTTTTAGATGGTTGTTAAATCGATGATGATTAGAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGATGATTGTTAGATCAATGATGATTAGAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 2626-3595 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRL010000008.1 Lactobacillus sp. W8093 NODE_19_length_117858_cov_169.094326, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 2626 36 100.0 30 .................................... TATATAAGGTTGATTAGTATCAATCCAAAT 2692 36 100.0 30 .................................... TTTTAGACTTGGTAGGTGGTCAAGGTGTGG 2758 36 100.0 40 .................................... ATTAATATATTGACCACCACCCGCAAGCACCCGCAAGCCA 2834 36 100.0 30 .................................... TAATTATCGCCTATTTCCTGCATTCTTTCG 2900 36 100.0 30 .................................... TGATTGACTGCCAACCTCTATCCATTGTGA 2966 36 100.0 30 .................................... ATTTAGTTTTGAAAACTAAATTTGAAGAAA 3032 36 100.0 30 .................................... GCTAAAAGGGGATGATAAACATTCAGCAAA 3098 36 100.0 30 .................................... ACTGATTACCTTCCGGATGAGGCACAACGG 3164 36 100.0 30 .................................... TTCATAGGATTGAGCCATGTACCGTTGTTG 3230 36 100.0 30 .................................... CACAGAAACACATGGACGCTGTCAATTTAT 3296 36 100.0 30 .................................... TTTGCATAAAATACCTTATGACCATTTATA 3362 36 100.0 30 .................................... CATAGCCTAAAGATATGCTTTGCATTGCTT 3428 36 100.0 30 .................................... TTGGCTCCACTCTAATTGCCTATGAGGGCA 3494 36 97.2 30 ....................T............... TTATTTTTGATGAGTTTCCCGAAGTTAATA 3560 36 97.2 0 ....................T............... | ========== ====== ====== ====== ==================================== ======================================== ================== 15 36 99.6 31 GTTTTAGATGGTTGTTAAATCGATGATGATTAGAAC # Left flank : TAAATCGATGATGATTAGAACATCATGTGCTACCAGTTGAACGCTTTCCAAGTTTTAGATGGTTGTTAAATCGATGATGATTAGAACGTAACATTTTGATATGAGTTATCGTCTTCGGTTTTAGATGGTTGTTAAATCGATGATGATTAGAACATCCTGAAGCATATTCAGATGAAGATATTAGTTTTAGATGGTTGTTAAATCGATGATGATTAGAACCGTGCCTTGATCTAAATTAATGATGGCGTCGTTTTAGATGGTTGTTAAATCGATGATGATTAGAACCTAACCAAAACAGATATCTGTACGTTACACGTTTTAGATGGTTGTTAAATCGATGATGATTAGAACTATATAAGGTTGATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGAACCTAACCAAAACAGATATCTGTACGTTACAC # Right flank : CTTTTAGCCATTATAACAACACACCTCATTTGTTTTAGATGGTTGTTAAGCAAAAGCAAAATATTATCATAAGCTCACAATAAAAGGCTTGCTTTTAAAGCAAGCCTTTTTGTTTCGCCTATTTAACAAGCCAATAGAAAATACAATCAATACTAGTCTTTTACAATATCTGTTCATTAAGTTCTTCATGCTAAATAACCAATAATTTTTAAAATATGATACAGACAATGTGGCAAGATCTGCAAATTTATTAAAACTAATTATTATTTACTTTCTTGTTGAATTCTCTCTTTGAAACATACTGAATTTTCTTAACATACTGACCTCTATGATCAATTTTGATATATTGTTTAGAAGGATCGTAACCACCTACTCTTCTGATCCTATATGGAAGTTTCTTACCAGTCTTGGCATCATAAGCTTGAACGTTAAAATACTTTTGCGTATTCTTTTCTACTTGAGCATAACTTTTAGTTTCGGGAATTGTAAGATTGAAACGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAAATCGATGATGATTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGATGATTGTTAGATCAATGATGATTAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //