Array 1 1-286 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGUC010000054.1 Limosilactobacillus reuteri strain O_Ruby_9_1 scaffold54, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 30 83.3 30 ------.............................. TTAATAATTCGTTATAAATATCAATATCTT 61 36 100.0 30 .................................... TCCTGTAGCCAAGCTTGGAAACACTTTAGT 127 36 100.0 30 .................................... GAATATAAGCAGGGGTTAGCCATGAGCGTA 193 36 100.0 30 .................................... ATGCAATTGCCCGCAATTTAACGCTTTTTA 259 28 77.8 0 ............................-------- | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 92.2 30 GTTCTAAACATTATTGATTTGAAGTACATCTAAAAC # Left flank : | # Right flank : | # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAAACATTATTGATTTGAAGTACATCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 8728-10019 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGUC010000062.1 Limosilactobacillus reuteri strain O_Ruby_9_1 scaffold62, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 8728 36 100.0 30 .................................... TGTACGAAACGAATAAAAGAAAGCCTAGCC 8794 36 100.0 30 .................................... TTAGTGGACGGCGCTTGGCCTATGGTTATT 8860 36 100.0 30 .................................... TATTCTCGTACTCAGGGGGGTCCAAATATA 8926 36 100.0 31 .................................... ATGGAAAGAATGCCCAACACAGTAAGCTTCA 8993 36 100.0 30 .................................... CAACCGCAAAAAGCCTGAAAAACAACGGCT 9059 36 100.0 30 .................................... CTACTAAGAGTTCTAAGACTATGCGTCACT 9125 36 100.0 30 .................................... CACTTTGTAAGTCAACCTTCGTCATATTGT 9191 36 100.0 30 .................................... AAGACTTTGGAAAGATTGGACGAAGCATAG 9257 36 100.0 30 .................................... ATGCAAGACTTTCTAAGTGAAGTTGAGCGA 9323 36 100.0 30 .................................... TACACTTAAATACTGATTTATTAATGACTT 9389 36 100.0 30 .................................... TAAAGCTGAGGGAAATACGGCAGAAGCTCA 9455 36 100.0 30 .................................... GAAAGCGAGGATGATTAAACATGGCTCAAT 9521 36 100.0 30 .................................... GAAGTAACAATGTTATTATAATAATGTAAG 9587 36 100.0 30 .................................... TAAACACGGGTTGCCCATCATTGCTGACGG 9653 36 100.0 30 .................................... AGCCATTGCCACCCAGCTCCTTTACGTTTT 9719 36 100.0 30 .................................... CTGTCATAAGAAGACTTGTCTGGGTCAAAG 9785 36 100.0 30 .................................... CCACAAAAGTAATTAATGGTATTCCCAAAG 9851 36 100.0 31 .................................... TTTAACCTAACAGTTACCACACCAAGTGACG 9918 36 100.0 30 .................................... TGATAATATTATCATAATCAAATTCTTGCA 9984 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 20 36 100.0 30 GTTTTAGATGTACTTCAAATCAATAATGTTTAGAAC # Left flank : GAATAATAATTTAGCAACAATTTATTCAACGGAAATTGTAAAGTCAATAATAAAAAATTTAACAGAAGAGGATCGTCATTTACTAGATGCTGAAGCACGTCGACTTTATTCGAATGTTCAAGAAATTTTATTTATGACAGATTTACCGCTCGAAGTTCGCTATGATGGTGATATCAAACGATTATTAAATTATTGTAAGATTAAATTTTCACCATTAGTTCAGCAAAGTCCTTATGATATAATAAAAACAGATTTAAAGTTACATTTAGAATGTGCTGATAGTTCATGTGTTGGGTTAAGTAATGTCGCTAATTACCTAGATTCAGCTCAATTTAACGAACTACAACAACTAAACATTGAATTGAAAATTCCTGTTTTATTAATAGAATTCACAGAAATAGATAATCGTAGATACTATGGAAATGCGAATTTTTATTATATTGACAGGGATTTCGTTGATTGGAAGTTATAAACTATTAATTCAAAATTAGAAAATAATG # Right flank : TAAAAAGCGTTAAATTGCGGGCAATTGCATGTTTTAGATGTACTTCAAATCAATAATGTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGTACTTCAAATCAATAATGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 61-1216 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGUC010000141.1 Limosilactobacillus reuteri strain O_Ruby_9_1 scaffold141, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 61 36 100.0 30 .................................... AATCAAATATGGCAAATGAAGTAACATACA 127 36 100.0 30 .................................... ATGGTGTGCTGTTTCAATTTGGTAATAAGA 193 36 100.0 30 .................................... AAACACACCAATGAATATCTGTTAGAGCGG 259 36 100.0 30 .................................... TTATTTTGACTTTTTACTAGCTTGCAGTCG 325 36 100.0 30 .................................... TAAAGAGTGGTAACGCTATGCAGTCTGCTA 391 36 100.0 28 .................................... AACGCGCGCAAAACCGTAGTAACGCAGA 455 36 100.0 30 .................................... TGCTACTATGAAGAAAATTCGGAACTTGGC 521 36 100.0 30 .................................... TGCTGTTAATCCCGTGGATGGGGATGCTAG 587 36 100.0 30 .................................... AAGATATTGATATTTATAACGAATTATTAA 653 36 100.0 30 .................................... TCTACCGGCGGATGACGATTGTTGAGCCTT 719 36 100.0 30 .................................... TTTTCAAGGTGGGAAATCATGGGTGGAAAG 785 36 100.0 30 .................................... GATCAAATTAACAATGCAGTACGTTCTATT 851 36 100.0 30 .................................... TCTCGATGACAGTGGTTAATTCCCTCGTTA 917 36 100.0 30 .................................... CTAACTAACTCGCTCAAAGCAACAGTTGAG 983 36 100.0 30 .................................... TTGGTAATTCAATGGCATACGGATGTTACT 1049 36 100.0 30 .................................... TCAAAAGCTTCGTCGGTAGCCTTCTCATCG 1115 36 100.0 30 .................................... AAAGCAATCAATGAAAACAGAATACAATAT 1181 36 91.7 0 ........................G...A......T | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.5 30 GTTTTAGATGTACTTCAAATCAATAATGTTTAGAAC # Left flank : GATGTACTTCAAATCAATAATGTTTAGAACAAGATATTGATATTTATAACGAATTATTAAG # Right flank : TAAATATTAGTCGAACTCACGGCTGAGAAAAATCTTAAATATGCTTCAAATTTCCCCGCCAACTTCAGCGGGGCTTTTTCATTTTCTTTTCAAATTAGTGTATAATATTTACTAAACCCATTACTAAAAGAGGTGAAAAATAATGGCAACAATTAAAGAAATTGCGAAAAAGTCAGGGTACTCACCAGCAACGGTTTCGCGCCTTTTGAATAATGACCAAAATTTATCGATCAGTCCAAGCACCCGCAACAAGATCATGACGGTGGCTACCGAGCTTGGCTATTGGAACAGCCACAAGAAAAACTCTCAGCAGCAACCAATTCGTCCTAATCTTGCTCTATTGTATCGGGTAAGCGGTAAAGAACAACTGCAAGATGAATATTTTGCGTTTTTACGCAATGCAATTATTAAAGAAGTCGATGAGGTGGGAGCACAGGTTGAGATCTTTAGTAATATCAAAGATTTAATTGCGACGGCTGATTCGTTCCAAGGATTTATTG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGTACTTCAAATCAATAATGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //