Array 1 111894-108020 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZTJ01000020.1 Salmonella enterica subsp. enterica serovar Tennessee strain 50259 50259_c20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 111893 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 111832 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 111771 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 111710 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 111649 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 111588 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 111527 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 111466 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 111405 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 111344 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 111283 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 111222 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 111161 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 111100 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 111039 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 110978 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 110917 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 110856 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 110795 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 110734 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 110673 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 110612 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 110551 29 100.0 32 ............................. TTATCACCTGAATGAGTTATATAGCGTTTTCC 110490 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 110429 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 110368 29 100.0 32 ............................. CCCCCACCAACCCCGCACCGCGCTGGCTAAAA 110307 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 110246 29 100.0 32 ............................. AACTGGTGATGTGTGAGCCAAAATTACGTGAC 110185 29 100.0 32 ............................. AGGCGATCGACGCGGAACTGGTGCGCGGTGAA 110124 29 100.0 32 ............................. TGGATGTGTACGCCGCCTCGCCGGATGAGGCG 110063 29 100.0 32 ............................. ATCGGCATTTCTCCAATCATGCAGCATGCGCA 110002 29 100.0 32 ............................. TTGTTGATTTTGTCGAAGGTCTTGAGCAGTGG 109941 29 100.0 32 ............................. ACAGGTAGATCATTTATTAATCAGAATTAACA 109880 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 109819 29 100.0 32 ............................. GTCTGTCTTTATTCCGTGATAGCGCCACTCAA 109758 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 109697 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 109636 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 109575 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 109514 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 109453 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 109392 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 109331 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 109270 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 109209 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 109148 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 109087 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 109026 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 108965 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 108904 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 108843 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 108782 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 108721 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 108660 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 108599 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 108538 29 100.0 32 ............................. CATCCCCGCGCAGCGCTAACGTCCAGGCATAT 108477 29 100.0 32 ............................. GATGCCCGGGGAAAACTAGATACCACCGCAAA 108416 29 100.0 32 ............................. CCATTTTTGCCGCCATATGCAGCTCGACGACA 108355 29 100.0 32 ............................. GGCGAACCCGCAACGGCACCGCAGCCAATGAC 108294 29 100.0 32 ............................. GGAGTAAAGGGGAATTTTTGGACATGTCGCCA 108233 29 100.0 32 ............................. ATCAGCTGCTCGCTGTAGGACATTTCTGTGAT 108172 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 108110 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 108049 29 96.6 0 ............T................ | A [108022] ========== ====== ====== ====== ============================= ================================= ================== 64 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 128911-128517 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZTJ01000020.1 Salmonella enterica subsp. enterica serovar Tennessee strain 50259 50259_c20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 128910 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 128849 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 128788 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 128727 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 128666 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 128605 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 128544 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCCTGCCGTCGCCGTCGCCATATCCGGCGCTG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51131-51769 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZTJ01000021.1 Salmonella enterica subsp. enterica serovar Tennessee strain 50259 50259_c21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51131 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 51192 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 51253 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 51314 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 51375 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 51436 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 51497 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 51558 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 51619 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 51680 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 51741 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : G # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //