Array 1 36357-37044 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRLY01000041.1 Pseudomonas aeruginosa isolate 205, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36357 28 100.0 32 ............................ TTGTGGCGCAGCATCCGGCGCGGATGGGACTG 36417 28 100.0 32 ............................ TGGGTCAAGACCCACATGCCCGAACACAGGGG 36477 28 100.0 32 ............................ GAGTGCCAGCGTCGGATAAGCGCCTGGATCAA 36537 28 100.0 32 ............................ TCGGCATTGCCGAGCGCTTCGATTGATGTGTA 36597 28 100.0 32 ............................ AATCGGAAACGGGGCCGTGATCGTCCGCCATT 36657 28 100.0 32 ............................ TCCCGCGGATACATGATCTGGTGGTGTCGCTC 36717 28 100.0 32 ............................ AAGAGGCTCACATCGCTCATAGCGTCCTGGGC 36777 28 100.0 32 ............................ AGAAGGCCGGGGTCCGTGTGTGGCGCATTGAC 36837 28 100.0 32 ............................ AATCCAGGTGACGTCGTGCATCTGGGACTCGT 36897 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 36957 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 37017 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 97.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAGCCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATTGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGACGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 47519-45570 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRLY01000041.1 Pseudomonas aeruginosa isolate 205, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 47518 28 100.0 32 ............................ TCTGAGGGCACATGAGAGCGCAGTGGTCTTCT 47458 28 100.0 32 ............................ ACGAATGCGAGTGCGACGGCGGATTCCACTAC 47398 28 100.0 32 ............................ ATATGCCGAAGCCGGCAACTTCTTCTGACTCG 47338 28 100.0 32 ............................ TCTGAGGGCACATGAGAGCGCAGTGGTCTTCT 47278 28 100.0 32 ............................ TCCCTGAGCGGGAAGGGAAGGCCATCAGGCCA 47218 28 100.0 33 ............................ ACTGGGTGCGGTCTCGGTACTCGGATGTTGAGT 47157 28 100.0 32 ............................ GTAGCCGACCGCTTGAACGACACCGCGAACGT 47097 28 100.0 32 ............................ TGGCTGCGTGCGGGCGAGTTCAAATGTAAGTC 47037 28 100.0 32 ............................ TGGACAATGCGCAGCCCAGGCGCTGGATTTAC 46977 28 100.0 32 ............................ TTGCAGCGTGAACATCGATGGCATGCATGTCC 46917 28 100.0 32 ............................ ATCACGATAACCGGTCACCATGCGCTTACGAT 46857 28 100.0 32 ............................ TTTACGCCATCAGCGGGGATCGATGGGGCCTC 46797 28 100.0 32 ............................ TGGGCATCCTGCTGCTGTCCGGCACGATGGTT 46737 28 100.0 32 ............................ TGAATCCCTCCTACGACACTTCCAACGTATTG 46677 28 100.0 32 ............................ GTCAACGATGAATATGGCATGACTATCTCGAA 46617 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 46557 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 46497 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 46437 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 46377 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 46317 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 46257 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 46197 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 46137 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 46077 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 46017 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 45957 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 45897 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 45837 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 45777 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 45717 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 45657 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 45597 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //