Array 1 263211-262780 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024728.1 Prevotella intermedia strain KCOM 1949 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 263210 36 100.0 30 .................................... TCTCTATATAAATTTCGTTTGGGTTCTCAC 263144 36 100.0 29 .................................... TTTAGAAACCCTTATCATTATTTAAGGGT 263079 36 100.0 30 .................................... TATCAATTACTGCTATACCATTCATACGAA 263013 36 100.0 30 .................................... AACAATTCAGGCTGTGCCTTTTCCCAAATG 262947 36 100.0 30 .................................... AATCATTGTTAGCCCCTGAAATGGCAGCAC 262881 36 100.0 30 .................................... ATTCTTTTTGTTTCATTTTGATAATGTTAA 262815 36 88.9 0 .........A......C.........C.C....... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 98.4 30 GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Left flank : TTTGAGAATATTGAGCGTGCAAAATATGAAGCCATACTGAAGGCACACCAAAGCATTTATAAATTGCTTAGGTTTATTACAGATACGGAAAACGACGACTGCATAATGGTGTGGGAGCAGCCTAAGGGCGGCGGAGAGAAAACTTATTACTTCAGACAAGCCAATATACGTAAGTTTATAAAAGAGCTAACCGAAGAGATATACAACAAGGGCAATGGCATATTTCTATCAAAAAAGGTAATGCCACTGATATTCGAATATAGAAGTCTTGTCTATGGACTGTTGCTTACTGCGAAGGACAAGCCCGACGAAACGATAGAAATAAAGAATGAGAAGCTTGCAAAGAGAATGATAGAAATTCATCAGAGCCTCTCAATACAAATCAGAAAAGATATAAATTTAAAACAACGAGATTTACAATTCGATAGTTAGAATGCGTAAAATGGTAGTGGAAAAGAAAGCAATAAAACATATAAGAATCAGACAGTTAGGTTAGGTAC # Right flank : TTATTAACAAGCACGGGAATGGAATTGGGGAAGTAAAAATGGAAGGGGGAACACGCCTTTCTATGGGTGAAAAAAGGCGAGAAAGGTGTAAATATTTTTCACAAGCAAAACTATTGCGTAACTATCTTGTTATCGGCGCATTGTAAAACCTATTGTTTTGCATTGCGAAATCGTAGGTTTTACACGGTAAAAGCGGCTCTTTTGCGTTGCAAAAGAGCCGCTTTTGGAATGTAAAATCGAAATTATGGTTTTTCTATGGAATTATCTTTACAAAACAGGAGTGGTTTTACGTCGTGGAAGGTGTAAAGGTTGTGGCGTGGCTTCGGACGGCAGCACAATGGCTGTTTGCCGATAGTGCGACATTGGCAAGGGTGGTTGGGGCTTTTGCATCGGCTCGATGCGGTGGCTCGTTCGGTTCGGTTGGTTTCGGTTGATGTGCAGCGACGACAGGAAAGCCGCTGTACAGAGCAAGATAAGATGCTTTCTCATATCGTTATCAT # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCTGCCTGCTGTTTGCAAGGTAAAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.70,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 751350-752549 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024727.1 Prevotella intermedia strain KCOM 1949 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 751350 47 100.0 30 ............................................... CCTAAGCAGTGGGGCACTCTTTCCTGTTCA 751427 47 100.0 30 ............................................... ACTGGAAATGAGAATGTCTATATAAAAATA 751504 47 100.0 30 ............................................... ACTTGAAGCTGACCTTCAGGCAGCGGAAGC 751581 47 100.0 29 ............................................... CTTTGCTATTAAATTTCATTCAAGAAGTC 751657 47 100.0 29 ............................................... GTTATAATGGACAAATTATTAATGTATAC 751733 47 100.0 30 ............................................... CTGATAACGAAAATAAAGTGATATTACAGT 751810 47 100.0 30 ............................................... TCGGCCATCTCACCGGCACGGGTGATGCAA 751887 47 100.0 30 ............................................... TGAGATTTGTACCAATTGTAACCCATTGCA 751964 47 100.0 30 ............................................... TTTAGGATTAACTGGTTGTTGTAGACTCTT 752041 47 100.0 30 ............................................... TCCTAAAGCTGCAAAAGCTATCCAAGCCCA 752118 47 100.0 30 ............................................... CGACACCTATTCGTTTACATTGAAAAACAT 752195 47 100.0 30 ............................................... CTATTATAAAACAACATTCAGTCTTGGGGT 752272 47 100.0 30 ............................................... GTACTCGTCTAACACAAAAGCGCTGCAATT 752349 47 100.0 30 ............................................... AAGCACACCCACACATAGAAATACTGATGT 752426 47 100.0 30 ............................................... ACTCTGCCTCAACACTCGCCAAATCTCCTT 752503 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 16 47 100.0 30 GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTAGTAAATACAAC # Left flank : GTGTTTTATTTTCAGTGGTTGCATACCTTCATTTGTTAAAGCCTGAATATTCGTTAAAACGACTCCGAAATTGTTAAATTTCAAAGCCCCAACTTCCGAATTATGGGCACTTTTCTGCACTTTAAATTATTTATTTGCAAATAACGCCATTATTTGCGTGCTATCGTAAGTGCTTCGTTCATAGCTTCTTGCAAGCTTATAGGGTAGTGTTGTGCAACGGAATCGCACCTTTTGTGTTGTAAAACGAATACTTTTGTTCGCATATAGGCTATATTTTGCGCTCCATCACCATCTTTTCGCTCTGCAAAAGAGCCGTTCTTGCAATCCAAAAGAGCTGCTTTTGCACGGTAAAACCTATTGTTTTGCATTGCAAAAGCGGCTCTTTTACTTTTCGACCCCTATTTTCCTGCTCTCTTTTTCTCTATTTTCTCCTTTCCGCTTGTGTTAAATTTATTGCCCCATTTACTTGATTTTAGAACAATAAATCGGAAGTGTCGTTA # Right flank : CTCAAATGGATTAAAGTGATGAACATCAGTGTTGTTACGAAAGATTAGAGAGAAAGAAAAATGCAAGCAAAATAAAGTTCCACTCGTTAAGAATGGAACTTTATTGTTTCTAAAAGAAGGATTAAAAGAGCTCTAATTGTGCTCCAGGTGCATTTGGTTTTTGTGGTTTCTTACCATAGAATAGCTTTATTTCTTCAAATTGTTTGTCTGTAATGCCCATTATTCCAACTTTTCCGTATGCAGGAATAAAGGTGGAAACTCTTTTAATGTGTACTTCCATATTTTCTTTACTACCACAGTGGCGTATATAAATGGAGAACTGAAACATTGTAAATCCATCTTTCAGCAAGTTTTGACGAAAGAGTGAAGCTGCTTTTCGTTCTTTCTTTGTATCTGTGGGTAAATCAAAAAATACCATTAACCACATACTTCTGTATTGACTAAATCTATAAGTTTCCACTAATAGGCTTTATAATTCTGGATAAACCAATCTTCTTTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTAGCTTTAAAATTAGTATCTTTGCATTAGTAAATACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:74.47%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //