Array 1 222628-223195 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADULK010000002.1 Serratia rubidaea strain SER00230 SER00230_c0002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 222628 28 100.0 32 ............................ TGAGCGATCACCCCGTGATTGTGGACGTGAAG 222688 28 100.0 32 ............................ TGTATTGCCGCTCTCAACAATCCGATCCACAC 222748 28 100.0 32 ............................ CCATCAATAGCAAACAGATACCCTGAATACCC 222808 28 100.0 32 ............................ TGCTGGCAATCAAGCTGCTGCAAGCGCTTGAT 222868 28 100.0 32 ............................ GCATTGGGTGACCAGGCGGACCCGTTCCGGCC 222928 28 100.0 32 ............................ AGCGTGCAGACCCGAACAAAGACGCAGCTAAG 222988 28 100.0 32 ............................ AGGAGTATCTCAGCGGCGAGCGCGTTGATGTT 223048 28 100.0 32 ............................ CCGCCGCGCGATGGCTTCTTGATGCGGACGGC 223108 28 100.0 32 ............................ CAGGTATTATTATCAACTATTGCCGCCTGTTG 223168 28 78.6 0 .....................GCC.TTT | ========== ====== ====== ====== ============================ ================================ ================== 10 28 97.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCTTTGGCGGTGATGGTTTGCCAACGCGGCGGCGGCGGCAGGATTGCAGGGGCGCGATGGCTGAGTTTTAGGCCGACTCTGCACAGCATGGCAATCAGTACGCTAAACCCTGCGGTATAGTGGATAACTGCCATATTCGCTCGGGCGCTGCTGCCGCGCGGAGCCAGACCTTTTAATTCCATCGCCGCATAGGCGACGACGACTAAAACCAGCACCAGCCAATGAAACACAATCTGACTGGGGGAGAATTTTTTATCCATTTTTGCATCCTCGCTGAATATCCATGGAGTTATAGTGTGTGAAGCTTAACCAGACATTAAGAGTGTGATTTTTATTGCCGTTGGCTTCTTGCCGACCAGTGGGAGTGGAGACCCTTTTTTTTTACGCCATGGCTAACCTATTGATATATCGTGGGGGAACTGGGCGAGGAAAAAAAGCCTTTTTATGCGTAATCATCCATAGTGCTTTTAAAAACAATAAGCTAGTGCTAATCTGCAACA # Right flank : TCCCTCGCGGTGATTCTCACGCCTCAGCGCGATGACAAACCATTTCGATATTATGGCCGTCCGGCGCAATCACAAAGGCGGCGTAGTAACTGGCGTGATAATTGGGGCGCAGGCCCGGCGCGCCGTTATCTTTACCGCCGGCCGCCAGCGCTGCCCGGTAAAAGTCATCCACCTGCCGGCGGCTGTCGGCGACAAACGCCAGATGCAGCAGCGCCGGCTGTGCCGTGGTCTGGTACAGGCACAGTGAGGTATTGTCGGGGGCGGCGATCTCTATCCCATAGTCCGGTGCGCCTTCATCCACCACGCTCACGCCCAGCGGTGCCAGTGCCTTAAGAAAGAAATTTTTGCTGGCTGCATAGTTGCTAACGCCAAATTTTACGTGGTCAAACATAGCTTCCCCTTACCAGTGATGAGCCGTGCGCTCACTCCAGTATAGCTACGCGGGTCGGGTATACCGCCATGCGGTGATTTTTTCTTTTTCCGCGTTTTGACGGGGAGCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 76532-76919 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADULK010000009.1 Serratia rubidaea strain SER00230 SER00230_c0009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 76532 28 100.0 32 ............................ TGATGCTGAATGACCGCTTCTCTATTGGCACC 76592 28 100.0 32 ............................ GTTTAAAGCCAACAAACAAGCGGAGTGCGATT 76652 28 100.0 32 ............................ ACCTACATTTACTCGAATCACCGGCGGCCTGG 76712 28 100.0 32 ............................ GCAAGCGCCTGGCTGTCGAAAACATCGTACTG 76772 28 100.0 32 ............................ GGCTCCGCGCACGGCAACGAGCATCGACTCCT 76832 28 100.0 32 ............................ ACTCGCGCAGGTCGCAACCTGTTTCCTCATCA 76892 28 96.4 0 ....................T....... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATTCGGGAAGGTTTGCTGCACTTCGGTGCGTACCACTTTATCTGCGCCACCGCAGACCGCTGCGGCATCAATGGTTTTCTTCTGGCCAATGCCGGAGACAAAGAAGTGGTGCGTGGTGGTCTGCTTAGGCGCTGCGACCGTTTGGTTTTTCATCGTGAACGTCTGCTGTGCACAGCCGGTAACCGTCATGGCGAGTACTACGGCGGCGAGTAATTTTTTCATTATTTTCAATTCCTTTTTAATCAATCAATATAAAGCGCGGGGATAATGCCACGCTTACAGAAATTTACAAGTGTGGGTAGCAATAAATAGCGTGCTAAGCGAGGGGGTTTGCGCGGCAGAGAGCGGCAACGTAGGGCTGCGCCAGCAACCCTTTTTTTAGCACTATGCGTAACCTATTGATATTTAATGGGCGTCTGAGCAGGCGTAAAAAAAGGGTATCAGCGGCTGAAAAGGGGAAAAAGCTTTAATTATTAAACCGCTGGCCTTAAACTCTAACA # Right flank : AAAACACTATATTTTCGTGACCATCTTTATATTCACGGCCTTATTGATGGTATAGGGTATTTTTATTGAAAATATTAGGTTTTTATGGAGTTAGGATGAAATATGGAAATGTTAAATAGACTATCCGCTATTCTAAGTTTACCGTTAACCCTGCTGTGTGTGTCGTTCTCATCACTGACGATTATGGGAGAAAACAACTCACTGATGGATGTTTTCCTGTCGGTGATTGTTCTGTTGGGCTTTCTTAATTTATTTCGGCTGATGGGGCGGTGTATCGTTTGGTTTAACGAAAACGATAAACGGTCAGATTAAATAAAGCGCGCCTTTGACCATTCCGGCAAGCCGCACAAACAACGGGAACCCCAGGGTTCCCGTTGTCGATTAACCATCATTGCCGCAGAGGCGTCAGCGCCCGCTCACGGCGGCCGGGCTGTCCGCCGTGGCCAGCGCATCCTCCAATACCTCAAACAGGCGGTCGATCTCCTGGCAGGTGTTGTAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4736-4947 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADULK010000004.1 Serratia rubidaea strain SER00230 SER00230_c0004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4736 29 100.0 32 ............................. GCCCACCCTGGCGCCACAACGCCGAGTGTCTT 4797 29 96.6 32 ................T............ GCGCGACAACGAAGCCTACATCAGTATCAGCA 4858 29 96.6 32 ..........T.................. ATGTCCGTTTTGGGATTGCTGAGCACAAAACC 4919 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GCGTGGAGATGATTTACCTGACGCTGGCGTTTATCACCACGCCGATTTTCTACCTTTCCGGCACCATCTGGCCGCTGCAGGCGATGCCGGGCTGGGTGCGCGCCATTTCCTACTGCATCCCTTCCACCTGGGCCACCAAAGCGATCGCCGGGGTGAACCAGATGGGGATGTCGCTGAATGAAGTGGGGAACGACGTGCTGATGTTGCTGCTGCTTGGCGCGGTGTATACCGTGATCGGCATCGGGGTGGGACTGGCACATAACAGCGTGGCGCTGCGCAGCCTGTTCCGGAAACGGCGGGCGTAGTGTTGCAGGATAAAGTCTGTTCGGTACGTGCGGCAGAAGGTGAGTGATTATCTGTTTGGTGCCGCGGCTATTCTGTGGCGAAGTGAAAATAAATTAATTGTTTTTCAATTGGTTATGTTTTTCAGATTATCGTGAAAAGTCGGTGACTTTTTTAAGTGGTAAAAAACCAATATAATTCAATTGGATATATTTAGT # Right flank : GCTATAACAACCTCACCCGGCAGTTACCGCACCAGTTCCAGCCCGGCGACGCGTCGCCAGTAGCCGTTGCAGTCGCTGTCGTTGGTCAGTGCCAGCGGCTGCCCGGCATTTTCGTTGGCGCGGAACTGCTCGAGCATCGCCAGCGTTTCCACGCCCTGCGGCGATAGCCGCACGATATCGACCAGCTCCTGCATGCCGCTTAGCTCATTACCCAGGTTGTAGCAGTAGCCGCTCATCGTCTGGATGCCGTTGAGCACGAATACCTGCTGGTTTTCCTGTGAGCGCATGGCGCGCCCCTGCGGGTATTTGATGCAGCAGGTTTCGCACTCATCCTTGCCGCGGTTTTCCGAGCGTGCGGTAAAGCAGCGGGCGGAGTAGGCCAGCGGCAGATGGCCGTAGCCCAGCACCTCTACCTCAAAGCCGCGGCGGAAGCCCAGCTCGGCGCACTGCTCCAGCACCTTGCCCAGCCAGTCGCGGGACAGTTCCACCGGCATGCACCA # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 15941-16148 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADULK010000004.1 Serratia rubidaea strain SER00230 SER00230_c0004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15941 28 100.0 32 ............................ TGCGCCGTATACCATCCACGCCACCGGCTGCG 16001 28 100.0 32 ............................ AGCGCGCAGTGATGGTGAGATCAAACTCACCG 16061 28 100.0 32 ............................ AACCCGGCGGGGCGGCACGGGGGCCGAGACGG 16121 28 71.4 0 ........T........T...AA.ACCC | ========== ====== ====== ====== ============================ ================================ ================== 4 28 92.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCGAGCTGACGTCCGCATGGCTGTCCGGACTGACGATCACGCTCGGCAACCCCAAAACCATCGCCTTTTACCTGGCTATTCTGCCGCTGGTCATCTCGTTGGATCATGTCTCCCTGCAGGTGTGGGGAACGATGCTGGTGCCGCTGACCATGTTTGTCCTCTTGCTTGTCGGCGCCATATTTATTCTGGCGGCATTAAAAATACGCCGTTTCCTCACCAGCGCATCTTCCCAGCGCATACTCTTTCGCACCACGGGCGTTATTATGGCGCTGGCGGCCGTTGGCATGGTGGTGAAATCTTTGTAGGGCGAGGGCAAATACCGTTGGCGTTTTATGGGGCTTTATGGCCTGAGCGTCATACCCAAGTCCTGACCCTTTTTTTATGAGCAACGTTAACTTATTGATTTTTAATAGTGTGTATCGTGTGTCTAACAAAAGGGTTTTGGACGAAATTATAGTGATTGTGCTGTTTAAACAAGCGATTAGCGATATACTGCAACA # Right flank : CCACTCCGGCGGGGTTTGCTTTTCTACGTAAGTCACGACCGGTAGCAAATCTCAGAAATTATAAACAACTGACACCAGTATAGATTTTGAACTCTCCAACATGCTTACTGTCACTGTTTCTTGAGGATCGTCTCCAGTCCAGCATGTGGCCTCGATAAAGCATTCTTTCTGCTTTTTGTACCCTGCAGTTTCCAAGTAAGCATCGACTTTACTCGAATCATCTGCATCGTAATATCTGATCGCATATACATGTGATGAAGGGCCGGTAATGTTTGCAAAATCAAAGTCATAACGAAGGGATATACGCGGCATAGCCTTCAGGAGGTCAGGAGTATAAAACTCATACTCTCTCTTATCCTGCTCGGTATAGTGTGCGCTGCCGGCAAAATTCATCGCTATATAAGGCCATGCCCACACGAATGCAGCAACAATCACCACTCCCGCCACTATGATCGCTTTAACTGATTTACGCATAGGGCAATACCCCGTTCCTCGCACTA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //