Array 1 8924502-8920056 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012109.1 Myxococcus hansupus strain contaminant ex DSM 436 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 8924501 36 94.4 37 ....C.........................T..... CCAAGCACTTCGGCAAGGAGATCGTGGTCCAGCACTG 8924428 36 100.0 34 .................................... GGGATGCCGGGTTCGGACAACCAGCGACGACACA 8924358 36 100.0 35 .................................... TTCCAGTTCGACACTTCCGGCGCGGTCGGCTGGCT 8924287 36 100.0 33 .................................... TAAGACGGATGTATGTGCTTTGGCCGGTGAATA 8924218 36 97.2 39 ...........A........................ CCGGGAGTGGGTGGATGCGCTGTGGTGCGGCCTCGACGG 8924143 36 100.0 39 .................................... GTGCCGAAGCAGTGCGTGGCCGGGTGGGGCGTTCAGCAA 8924068 36 100.0 38 .................................... TCTCCGACTCGTTTCCTTCCAGTAGCGAGGGTGGAAGT 8923994 36 100.0 33 .................................... CGGGGAGCGGTGTGACCGCGTCGCCGCGTGGTG 8923925 36 100.0 34 .................................... CCAAGTTGAAGGGTCCCTTCATACGCGAGGAGTA 8923855 36 100.0 35 .................................... CGCTGGCGGTATGCTCGCGCTGAGCGCGGGCAAGG 8923784 36 100.0 38 .................................... TCCTCGCTCGGTCTGTTGGCGTCGTTGGCGCAGATGCT 8923710 36 100.0 35 .................................... GGGCGAATCACCTCACCCAGGCGGACAATGACCCC 8923639 36 100.0 37 .................................... GTTACGGTGCTGGCCCGCTGTTTTTCACCGGCACGTT 8923566 36 100.0 38 .................................... ATAACAGCCGCCAAGCGTGGAAAGGGCCCTGTCGTCAC 8923492 36 100.0 40 .................................... CCGCCTCGCGAGCGGTCAAGGCGCGTGAGGCTGCCAGAGC 8923416 36 100.0 36 .................................... AATCTTCATCGATGACGTGCTGATTGCGGACGTGTT 8923344 36 97.2 35 .........................A.......... ACGAGCATGAAGCTGCATCTGAACCTCCTCGGCGA 8923273 36 100.0 34 .................................... TGACGTGGGATGGCGTGGCACAAGGTGGGGAAGG 8923203 36 97.2 35 A................................... ATGTACCTTGCCCCCGAGGTCGCCCGGGTGCGTGA 8923132 36 100.0 37 .................................... CCGGTTCTCACGCGCGTATAAGTGCCAGCGTCCTACC 8923059 36 100.0 37 .................................... CCGGTTCTCACGCGCGTATAAGTGCCAGCGTCCTACC 8922986 36 100.0 35 .................................... ACGCAGAACGCGAAGGAGAAGCTGGGCCTCTCGAA 8922915 36 100.0 35 .................................... AGAACGCGTTCCGATGGCAGCTTGATTCTGTTGAG 8922844 36 100.0 35 .................................... CTTGTGTGATGGCACTCAATCCCGCGTCGGTGCAT 8922773 36 100.0 40 .................................... ACCAGGAAGTCGAGATTGAGGTCGAGCTGCGCGGCCGGAC 8922697 36 100.0 35 .................................... ACCCGGTGCTCGGTCCGGTGGTATGGCAATGACAC 8922626 36 100.0 35 .................................... ACTGCCTGATGCGCGGAGAGGCTCCGTTCGCTTCG 8922555 36 97.2 37 ..............................A..... TCGACGTGCAGGGGTTGAGGTGCATCCTCTGGACGAA 8922482 36 100.0 37 .................................... TCGCGCCGTTCGATGGGCGCACGGGCGAGCTGATCCT 8922409 36 97.2 34 .......................T............ AGGTGATGGGGTTCCAGGCCCAGATCGTCTACCG 8922339 36 100.0 36 .................................... GAAGGCGAAGAAGGCCGTGAAGAAGTTGCCGGAGAT 8922267 36 100.0 34 .................................... TTCGCACCCATGCTGTTCTGCAGCCTGCAGGGTG 8922197 36 100.0 36 .................................... CGCGCGCCCACGGCCCATACGTGGACGCATAGCAGT 8922125 36 100.0 38 .................................... CGACCGGAGATGGTGAAGAAAAGTTCAGTCAAGAACGC 8922051 36 100.0 39 .................................... TACCCTGCCGTCTGGCAACCCTGTGGTGTCGGGCACCAC 8921976 36 100.0 34 .................................... GCACCACCACGTCATTCGCTGGCATCCCCGACGC 8921906 36 100.0 40 .................................... GTGGATGCGCCGGTGGCTGAGGGTGTGCCGACCGACAGCT 8921830 36 100.0 40 .................................... TGGACACGGAGTTCCCCTTCTACCTGGAGCCGGACTTCCT 8921754 36 97.2 37 ...............T.................... TTTTCGCTGCACGCCGAAGTTCGCCCTCATGGAGAAG 8921681 36 100.0 36 .................................... CGTGACGGGTACGCCGACTTCGGCGGGCACGCTCAA 8921609 36 100.0 36 .................................... CTCTTCACCCAGTCCTACGTCGTTCTCAGCGTCGAA 8921537 36 100.0 35 .................................... CAAGACCGGTCTGCCAGCCGTGGTTGTGTCCAAGG 8921466 36 97.2 35 ...........A........................ ACCGAACCTGCGCCCAAGGTCCACGTAGCCGCCGA 8921395 36 100.0 35 .................................... TGTCTCCAGTCGGCCATCGGCAACCACTGGGAGTG 8921324 36 94.4 38 ..............................TT.... CCCAAGCACTTCGGCAAGGAGATCGTGGTCCAGCACTG 8921250 36 94.4 35 A...........................C....... CTCATCAACGGCGTCCTGCATCACAACATCAAGAA 8921179 36 100.0 38 .................................... TATGCCTACTAGGTGGCCGTGGGCGCATCGCCCGTCGT 8921105 36 100.0 39 .................................... GAGCGCCGGTAGTGACGGCGCTCAGATCAAGCTGGGGTG 8921030 36 91.7 23 C.................T.........C....... CGTCTTGGTGCCCAACGAGTCAA Deletion [8920972] 8920971 36 97.2 36 ..................T................. GTTCGCCCCCCACTTCAGCCGCAAGCCCACGTCCAA 8920899 36 97.2 38 ......G............................. CAGCTCTTCGACATCGTGCGTCGGAACATCGAGTGGTG 8920825 36 97.2 36 .C.................................. TCCCCTTCTTCCCCTGCCTGAACCACAGAGAGATAG 8920753 36 97.2 39 ...A................................ ACCGCCGCGCACGCTCGCCACCATCGCACCCCTCCCTGT 8920678 36 100.0 40 .................................... CCGTCCGCCGTCCTACGCAACGAACAGTATGCGTAGCGTA 8920602 36 100.0 38 .................................... ACCACCGCACCCAATATCCAGTCCAACCCGTGGCCGCT 8920528 36 100.0 36 .................................... TGCCGGACTGGGCAAGTCAATCGCGGCGCGAGGTCT 8920456 36 100.0 36 .................................... GGGCCTTGAGCTGTTCGAGACCCGGCAGGTGTTCGT 8920384 36 100.0 35 .................................... CTCAAGCAGGGTCTGGTGAAGGAACTCATTGACGC 8920313 36 100.0 34 .................................... CCGCCATCGGATGAAACGCAAGGACAAACGACCA 8920243 36 100.0 44 .................................... TGGCTCAAGGACGCCGAGCCGGTCAAGGACGCGGCGGGGCGCTA 8920163 36 100.0 36 .................................... CCGGGGCATGGTCAAGGAGCACGACGAGTACCAGGG 8920091 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 62 36 99.1 36 GTGCTCAACGCCTTCCGGCATCACGGCGAGCGCGAC # Left flank : ACGGGCAGCGGCTCCGCGGGCGTACGGGCGACGGTGACGGCGCGCTCCCGCCTGACGCGCGCCCCCGGTGCCTGCTCATTCGCCGCAGCGGCGCCCGAGACGAGCGCGAGCACGAGGGCCAATCTGAAAGGTTGGAGCAATGGTACGTGACCTCCCGAATGGGAAGGCTACCATCGTGGATGCCCGCGCAGTGCGGCTCTTTCCTGTCGCCCGAGCCGCGTTCCGCGCCACCAGGCCCCCTGGGTGCAGGTGCTGACGCTGTGCCAGCAGGCACAACGTGATGCGCCATGAGCGGATGTGGTGGCGAGAGGCCCCAGCGAGCTGCCGCACGGACGGTGCCGCTGGCGGGAAACAAGCGGAACTTCCACCACCTGATGGCAGCGTGGCGCGGAACCTCTGCCCATCAACCGACTTCCACAGCCATTGCAGGCCTTGGGGACCCGCTCGACGAAGTGTTGCGGCGCCTGGTGAACGGCGACTATTGACCTTGCGGCCTTCTG # Right flank : AGCCCGCCCGAATTCCCCAGCAACTCCAGGGACTTACAGCCCTCTTTTCAAGCACCTCCCCCGCCTCCACCCAGGTTGTCAGGTCCAGACCCTACCCAGAACTCCGAACCTACGGAAATCACTCGTCTTTTCATCGATCATGCACCTATTCACCTGTCAAAGAGCCACAACCCCATGAACTCCCTGGGGAATTCGCCCATTTCGCCGTGACAGCCCTCCGCCACGGCGAGGTGCTTGAATGTCTTTCGCGCCCTTCAATCCCCGCAGGGCCCCTGCCAGGACACAACGGCACCTGGACTCACGCGGCGGTCGCGAGCCCCTCACGAAGCGGGACGACGCCTCGTACCGCGGGGCGAGGCGGAAGGAACAGGCCGCAACCCATGTGGCGACGTCCGCCCATCCCTCGCGCCTGGACACGCAGCGAGTCCTCTTTCGACAGGCCCTGCAGTTCAAGGGCATACCCCACCACCCGCCGCCCCTGGATGCACACCACCCGCCTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCAACGCCTTCCGGCATCACGGCGAGCGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 8957458-8959737 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012109.1 Myxococcus hansupus strain contaminant ex DSM 436 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================================== ================== 8957458 36 100.0 36 .................................... TTTTCCCGCTCGGCCACGCCGGGCAGGGCGAGCGTG 8957530 36 100.0 36 .................................... AAACACTGGCTGGGCGTGCTCGCGCATGCGCCCTCG 8957602 36 100.0 38 .................................... ACCAACCTTCGCCGTGCGCTGCATGAAGAACGGAAGTG 8957676 36 100.0 35 .................................... CCGGGCCGAATGGAAACGCTGGTGCGAAAGGCCGG 8957747 36 100.0 38 .................................... TCGAACTCGGCGGCGAAAAACGGGACGCGGGTGGTCGG 8957821 36 100.0 36 .................................... ATTGCCCACGCATGCGAATTCAGAAACCTTCTTAGG 8957893 36 100.0 38 .................................... TCGTTGAGCGCGAGGGGCAGGCCGTAGAGCTTGTTGAG 8957967 36 100.0 41 .................................... AACATGAACGAGACGGTGTTTTTCTCTGGTGGGCACCCCAG 8958044 36 100.0 37 .................................... ACGCACTCGTGCGCATGGCGTCGCTGTACGGGATCGG 8958117 36 100.0 35 .................................... CTGCTACTCCGCCCGACTCGGGTCGTCCGGGGCCG 8958188 36 97.2 37 ........................T........... GGACCCATCGAGGGGGTGGGTGGGGAATGGGGGGTGG 8958261 36 100.0 37 .................................... TTCAGTTGGGCCACCTTGCCTGAATCTGGATACGAGG 8958334 36 100.0 41 .................................... ACCGTGCAGTCGATTGACTCCGACCTCATCGACGCCGGAGG 8958411 36 100.0 38 .................................... GCTTGCAAAATGACCGTACGTGAGCGGCGGGCACCCAA 8958485 36 94.4 33 .......G................T........... GGCACGCCGCTGGCGGCCTCCTTGGGGGTCGGC 8958554 36 100.0 39 .................................... ATCCAGGGCGTGGTGACGGCAGCGGCCAACGCAGGCGTG 8958629 36 100.0 35 .................................... ATTCGGAGCAAGTACGACGCCTTCGAGCGCGCCTT 8958700 36 94.4 36 T.................................G. AAGGGCGTCCAGGCGTGGATTCCCTTCACGAAGCCG 8958772 36 91.7 33 ...................T..TC............ ACGTAGCGAAGGCGGCGACCGTTCTCTGGCCTC 8958841 36 97.2 32 .......G............................ TCGACGTGCCCGTCGGCGTAGTGGAGGCGGTA 8958909 36 94.4 37 .......G.......................G.... CTGACTGTCGCCACCATGCCGGTGGACGTGACGGGAA 8958982 36 97.2 40 .......G............................ CGGAACGAATCTTCTGCCCCAGCTTCTCGTCCCACCGCTG 8959058 36 97.2 34 .......G............................ CCATCCTTGATGGTCATCGCGCCAATGGCCATGA 8959128 36 97.2 40 .....A.............................. TTCGCCGACACCAAGCGCCCTCCCATGGGCAGGGGGCCGG 8959204 36 100.0 40 .................................... ATGTCGGACATGGCCGTGACCTCGTAGAGCATGTCCCGGA 8959280 36 100.0 36 .................................... CTGCACGTCGGGTCTACCGCCGCCGTCACGGTGCCG 8959352 36 91.7 37 ...........G....................A.C. TACCAGTCGAGGACGCCCTTTGCGATTGCTACCTCTG 8959425 36 88.9 98 .C.........AA....................A.. GATCGCTGCCAGCCGCGCGGGTTCGATAGCTCGCGCGTCCCGCTCGCAGTGCGGCGATGAGCCTAATTCTGGGCCACCGACGCGAGCCCGGAGGTGAC 8959559 36 94.4 35 .............A.....................T GTGTCGAGGAAGTCATCCTCGCGCCACCCGACCTA 8959630 36 91.7 36 A..........GA....................... CGCTGTTGGCTCGCTTCAGGCGAGCCGCCGCCGTCA 8959702 36 86.1 0 .C....T....G....................A..T | ========== ====== ====== ====== ==================================== ================================================================================================== ================== 31 36 97.2 39 GTCCCGCTCGCCGTGATGCCGAGAGGCGTTGAGCAC # Left flank : GACCCCAGACGCTGGCGGAAGGTGTACGCCCTGCTGAAGGGGTATGGGGAGTGGTTGCAGCTCTCGGTGTTTCGCTGCTCGCTGACGGACCGGGACCGCGAGAAGCTGCGCTGGGAGCTGGCGCGCCGGATGGATGCCGTGGATACGTTGCTGGTGATTGGGCGCTGTGGCGGGTGCGTGGAGCGCGTGCGGGCCATCAACGCGAAGGAGGATTGGCCGGAGGAGCCCGCACTTTTCAAGGTGCTGTGAGGTGAGCGACAATCAAGCACCTCGCCGTGGCGGAGGCCCGCGACGGCGATAGTGCTGAAATCCCCAGGAAGTTCATGGGGTTGAGGCTCTTTGACAGGTGAATAGGTGCATGATCGACGAAAAGCCCTGGGGTTTCATGGGGTTGGCGACCTTGGGTAGGGCTTGGGGTTGCCAACCTGGGTGAAGGAGGGGGAGGTGCTTGAAAAGAGGGTCGTAAGCTGGCGGAATTGTTGGGAGATTCAGGCGGGCTG # Right flank : TGTGTAGGTGGTGTTCATCTCCAGCAAATCCGGGTCTGGGATGTTTCGCTCGCCGTGATGCCTGGAGCCTTAGCGTTGCGTCGCGGATGGTCAGTTCGGTGACGAAGCATAGCAGGTAACTCACCGATTTTCTGCCATGCGAACAGATGAGACGCCTTCCTGGTTCGGGATGATGCACGCTGTTGGAGAGGGACAGTGCGTCGGTGTTTGCGTGGCGGTTAGCGCATAGCGAGTTCGAGAAAGCGGATGCCTTTCAGCTTCGATTGAAGTACCGCATTCATGAAGCGTTCAGTACTTACGATCATCGTTGCGAAGTTCCCCAGCCGGAATATGTCGAGGTTTGGGGGAATTGCTGTCGCATCCAGTACGGGCTCTTCGGGGCGAGAAAGGTCCACCCAGCCGCATGTTCCACACGGTGGAGTCGCATCCCTCGGGAGGCAGTCGGGATGCAGTCGCCCATGAGGTTGGAGCTGGGGCTCGAAGTATGCCGGAGGTGACTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.16, 8:1, 9:0.87, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGAGAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 9240090-9245103 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012109.1 Myxococcus hansupus strain contaminant ex DSM 436 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 9240090 37 100.0 33 ..................................... CAGCCGCGCAGGGACGGGCAGCCGCAGATGATG 9240160 37 100.0 33 ..................................... GGCTCGGTGCGACTCCAGAAGTTGCAGGGCGAG 9240230 37 100.0 34 ..................................... GACCCGAACCAGTTGGTTGCGCAGGCCGAGCAGC 9240301 37 100.0 34 ..................................... AACGTGGCTCTCAGCTTGCGCAAGCGGGAGAGCG 9240372 37 100.0 36 ..................................... GTTGCCGGGCCTGCCGCCACGGACGCCGTGCTGGAG 9240445 37 100.0 34 ..................................... GCCCGACGCGGGGCATCGAACGAGGGCACCTGGA 9240516 37 100.0 33 ..................................... AACGGCACTCCCATCCCGCCAGCGTCGCCGGAC 9240586 37 100.0 33 ..................................... TTCGCGGGCGGGGTGGTGGTGGGCACCGCGGGC 9240656 37 100.0 35 ..................................... ATCGCTTCGTCTCCGTGGTGTTCGGTGTTCTGGCC 9240728 37 100.0 32 ..................................... TCCGGACTGCGTTGAACAACCTCCGGGCCTGA 9240797 37 100.0 37 ..................................... CGCCCCCGGCATCCCCCGCGGCCTCGGCGGCGGCGTC 9240871 37 100.0 33 ..................................... ACCAAGCTGAACTCACAATCCAGGAGCTGCTCC 9240941 37 100.0 37 ..................................... CCGAAGCCTCCCCCCTTCGGTGGCGGAGCGCCCGTGT 9241015 37 97.3 35 .......................A............. GGGCAAGGCGCCCCTGCGAGGCCCCACGGTGGGCC 9241087 37 100.0 35 ..................................... CTGCATGGCCGCCACCAGCGGCGCGAGGTAGCCGC 9241159 37 100.0 36 ..................................... AGCCCGACGATTGACCAGGACAACCCCACTCGGGCC 9241232 37 100.0 35 ..................................... GTCGACCAGCCCTTGCACGCCCAGGTGCTCGCCCG 9241304 37 100.0 35 ..................................... ATCTCGGCGTCGAGGAGTTGCTCGCGCGACAGGTC 9241376 37 100.0 34 ..................................... TCGCGGTAGGTGCGCACGCGCCGGGTGCTGTTGG 9241447 37 100.0 35 ..................................... TCCGCGTTGGTCGAGATCGCGCCGAACGTCGAGGC 9241519 37 100.0 34 ..................................... CTCGTCCGCCATTGCTTGCTGCCTTTCGTGCGGT 9241590 37 100.0 33 ..................................... CTGCTGCCGTGCTTTCGCCTGGAGGCTGCTCAA 9241660 37 100.0 32 ..................................... CCCAGCTCGCCGGCGGCGCGGTACAGCTCGGC 9241729 37 100.0 34 ..................................... TAGAGGGCGGGTATACGCACGTTAAGCCTGTCTG 9241800 37 100.0 33 ..................................... CTGACGGGAGCAACGGGGTTGCTGTCCATGGCG 9241870 37 100.0 34 ..................................... TTCGGCATGTTGGCGGACGGCCTGGGGCTGTAAT 9241941 37 100.0 33 ..................................... TGGGTCAAGCAGCGTCACGCCCAGGACCCCATC 9242011 37 100.0 35 ..................................... ACGAGGAAACCGCGCTCTTTGCGCATCCAAGCCCG 9242083 37 100.0 34 ..................................... AACATCGGCACGCTCGAAGCCCCCAAGAACACCG 9242154 37 100.0 35 ..................................... CCGCGCAACCTCTACTGACAACGGCGCGCCCTGGT 9242226 37 100.0 33 ..................................... GCGGTCACCGTCGAGCACTCGCGCCAGCTCGTT 9242296 37 100.0 33 ..................................... AATGGGCAGCGTCTACCTCTGCGGGGTGATGGA 9242366 37 100.0 36 ..................................... CTCTCCAGCCTGCTCCCGCGCGAGCTCTACGTGGGC 9242439 37 100.0 33 ..................................... GATTACCGTCGGCCGCCCTGAAGACGACGAAGT 9242509 37 100.0 33 ..................................... AAGGTGGAGAGGATTCGCAAGAGCCCGCCATCC 9242579 37 100.0 35 ..................................... GTCCCCTCGTCGAACACCTTCACGAGATTCTCGAC 9242651 37 97.3 36 ......................G.............. AAGTAGTCGCACACTTGATCGATGGTCCACAGGCAT 9242724 37 97.3 35 ......................G.............. TGGCGGGCGGTGGCGGAGGCAACGCGGGCCCACCT 9242796 37 97.3 33 ......................G.............. CCGGCCGCGGAGCGGGTGTTGGTGCCGTTGGTG 9242866 37 97.3 34 ......................G.............. AGCAACTCCAGCTTCGAGCGGCTCCACATGGACG 9242937 37 97.3 33 ......................G.............. TTCACCCTGTGAGGCTCGACGTGGACTGGTGCT 9243007 37 97.3 33 ......................G.............. AAGGGGCTGACGGGTGCGAACCCCGCGGGCCTC 9243077 37 97.3 35 ......................G.............. CGGTCGAGCTTGCACAGGGAGACCTCACTCGCTGA 9243149 36 97.3 33 ......................-.............. CAGATTGACGACCGCAGCCATGGGGAGTGGCTC 9243218 36 94.6 35 ...................-..G.............. TTGCCCTTCTCCGGACCCTCGAAGGTCTCGATGAA 9243289 37 97.3 36 ......................G.............. CGCCAACCGTTGAGGTCGAGCCCAGCCGCTTCGCGA 9243362 37 97.3 34 ......................G.............. GCGTACGCCTCCACGTTGGGCGCAATCTCCACGA 9243433 37 97.3 32 ......................G.............. CTTTCGGAACCGCGCAGCCTGCCGAACGCTGA 9243502 37 97.3 34 ......................G.............. GCATGGCTGAGACGGGCGAGTATTTTCCGGGCAA 9243573 37 97.3 35 ......................G.............. GTGCATGTCCCCGCTGAGTCTCTCATCGCTGCCTA 9243645 37 100.0 34 ..................................... CTGCACGATAGCATCCTCAAGACGCCGGGTGCTG 9243716 37 100.0 36 ..................................... TCCAGCTTGTCGTGCTTGCCCACCATATGGACCAAG 9243789 37 100.0 33 ..................................... TCCCGCGCACGATAGCCCAGCTCCAGCCGCCCG 9243859 37 94.6 38 ..............G..............C....... GTACTGGTGGATTCGCTGCTGGAGCGCGACGCGCAGCG 9243934 37 100.0 32 ..................................... TCTGACGAGGCGCCCCGCGAGTGGCTCCTCCC 9244003 37 100.0 34 ..................................... GCCACACCTCCAGCGCGCGCACGCCACTGCTGGT 9244074 37 100.0 34 ..................................... TGCATGATGCCGTTGCGCAACTCTGCTGTGAGCG 9244145 37 100.0 33 ..................................... TGGGCGCTGACGGAGGCAGTGGGGAACATCGAG 9244215 37 100.0 35 ..................................... AGCAAACGACTGGACCGACAAGCCAACCATCGCAG 9244287 37 97.3 35 ................................A.... GCGTTCTACTACGGGCCCTGGCAGTGCAAAGCCCA 9244359 37 97.3 34 .C................................... AATCAGGATGCGGAGGCTCAAATCTTGGCCTGGG 9244430 37 97.3 34 .G................................... CGCTCGGCATGGAGTACTGCGGCAGGCCGTGCAG 9244501 37 100.0 34 ..................................... AGAGATGTGTCGCCTGGGGGCACGGAACTGCTCT 9244572 37 100.0 33 ..................................... GCGCGGAACGGGGCGCTCGTGCAGGTGGTCAAG 9244642 37 100.0 34 ..................................... CGCGCGGCGAATCTCTACTCTGGGCACCGACTCA 9244713 37 100.0 35 ..................................... AAAAACGCGGGTTACATGAGCGGCCTCGCGGTGGA 9244785 37 97.3 34 ....................................T CGATGCGGAAGGGGACTCGTACGAAGTTCACGCA 9244856 37 94.6 35 ...A....................T............ TGGGACAAGGCGAATGCGCTGGAGTTGCTGTCGAA 9244928 37 94.6 33 ...............A.T................... AACCAGGACGCCGAAGCTCAGATTCTGGCCTGG 9244998 37 89.2 32 .......T.................A........GG. CGCGTCGAGGTGCAGTGCTCGTCGGGCACGTC 9245067 37 78.4 0 ......T.......G.....AA..T.....GC...C. | ========== ====== ====== ====== ===================================== ====================================== ================== 71 37 98.6 34 GTCGCTCCTCGTGAACGCGAGGAGCGTGGGTTGAAAC # Left flank : TCCCTTCGCGATGCGCTGATGCGTAAGCTCACGGTGTTGATTTGTTACGACGTGCGGGTGTCGGACCCTCAGGGGGCTCGGCGCCTGCGCAAGATTGCACGGGCCTGCAAGGACCATGGCGTACGGGTGCAGTACTCCGTCTTCGAGTGCGTGCTGGAGCCCAAGGACTGGGTCGTCCTGCGCGCTCGCTTGCTGGCGGCGTTCGAGTCGGAATGCGACAGCCTGCGCTTCTATTTCCTGTCGGAAGACGATGCCCGGAAGACGGAGCATCATGGTGCCAGGCCACCGCTGGACGTCGAGGGACCGCTGGTCCTGTAGCCGCCCGCGAACCGCCCCCGGTGGTCCCTCCGCCGAGGGTTCGCGCTCTTTGAAATCCCGAATAGTTTTCGAAGGTTGGAGGATGCGGAGCGGGCGCCGATGGCCCGCGTGCCGGGCTCCCGAGGCAGGTTCGCGAATCGTGGTCAAATTCCGTAGGAAGAACGGTAAGTTGGCGGGGCAGG # Right flank : CAAGTCTGGCCGCGCGCGATAGTCGCGGAGGCGAAAGTGAGGGCGCTCCAAAAGAGCGCCCTCGCGAATCGCCGTGCGGTCCTTCAGTTCACGACGAGCGCATCCGCCGACGTTCGTCGAAGTCTCCGAAGAGGGCTTCTATCACCTGTCGAAGGGACGCCTTCTCAAGGGAGGGGAACGGATTGATACCCTTCTCGTTGTAGATCTCGACGCCGTTCTGGAAGACGGTGAACCCGGCGCTGGGCCAGGAGTACACGGCGAGGTGTCCTTCGGGGTGGCGCTCAATTTCGATGCGGCCCCCAAGAGGGCCTTCGCAGGTGATCTCAAGCCTTCCGCTCGCGGGAATGGAAAAACACATTCCAGACGGCTCAAGCCAAAGCTCGATAGGCGTCAGGCCGGGGTTTTCGCAGGTAATGCGTTCCGTGATTCGTTGCATGTCGACATGGCCCTTTGTGGTGGCGGTCTTGCTCCGGATTGAAGCACGGCGGTCGGTGATCGGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGAACGCGAGGAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.10,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //