Array 1 1060080-1064345 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028288.1 Acidovorax avenae subsp. avenae strain AA81_1 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================= ================== 1060080 36 75.0 30 AACA.A.....C.....C.....G.....T...... GCACGAGCCTCCGGCCCTTGCGCTGGTACA 1060146 36 100.0 30 .................................... ACATCGGCTGCGCGTACGCACGCCGCGTCA 1060212 36 100.0 30 .................................... CCGTGACAGTGGGCTGCAATGCGCCCACCA 1060278 36 100.0 30 .................................... CGCATCTAACTGCATGCGAGTCTCCTGCTC 1060344 36 100.0 30 .................................... CCTTCCGGACGGCAGGACCGTCACGCTTGA 1060410 36 100.0 31 .................................... GAGCTTGTTGCGATGGAAAGCGAGGTCGCAG 1060477 36 100.0 30 .................................... CGTCAGGGGCGGGGAGCTGGGCGATGTCGA 1060543 36 100.0 30 .................................... CTCGATGCCCGAACAGACGGACCCGTAAGT 1060609 36 100.0 30 .................................... ACGTTCCGCTCGATGTCCTCACCCGCTGCG 1060675 36 100.0 30 .................................... TGAAGTGGTATGCGTTTTCCTTGCCGCCCA 1060741 36 100.0 30 .................................... GCGGAAGATCACACTCCGAGCCACGCCGCG 1060807 36 100.0 30 .................................... CGAAGCCCAGGTCTTCCAGCGGGGGCAGCG 1060873 36 100.0 30 .................................... CTGGCGCTCTTGCTCCGTGGCCCCACGGCG 1060939 36 100.0 30 .................................... TCTTGAACGGCTGTTCGATGATCGGCTCCA 1061005 36 100.0 31 .................................... TGACCACGTCGGAGATGAACTGCTCGGCGTG 1061072 36 100.0 30 .................................... GCGGGACCAAGCCGCAGTGAGGGCAGCGAT 1061138 36 100.0 30 .................................... TCAGGTCCTGCCCGATGGCCTGCCCGACCT 1061204 36 100.0 30 .................................... CGTCTCCGCCGGCTGCTCGCCGCCGCCCCA 1061270 36 100.0 30 .................................... TGCGATTGGATCGCTCCAGCCCCTGCCGTA 1061336 36 100.0 30 .................................... CGACAGCCTGGCCGGTGCCCAGCCATACAT 1061402 36 100.0 30 .................................... AGCCAGGTTTCGCGGTTCATGATGCTGTGT 1061468 36 100.0 30 .................................... CGACAGCCTGGCCGGTGCCCAGCCATACAT 1061534 36 100.0 30 .................................... AGCCAGGTTTCGCGGTTCATGATGCTGTGT 1061600 36 100.0 30 .................................... GACCGCGACCGCCAGCATCCAAGGCACAGA 1061666 36 100.0 30 .................................... GGTCTGTCCCGAAAGGGGGATTGAGGTATG 1061732 36 100.0 30 .................................... AACGGTGCTCGCTATGGCGTCGGCGTGCCG 1061798 36 100.0 30 .................................... TCGTGCGCTCCTGCTCCAACGGTCACAGGT 1061864 36 100.0 31 .................................... CGAGCGATGGTCTTTTGGCCTGACAGAGTTC 1061931 36 100.0 29 .................................... TTCGCAACACGGTGGGCCTCACGGCCTGA 1061996 36 100.0 30 .................................... CAGCTCTAGGACATCCATTAGGAACTACAT 1062062 36 100.0 30 .................................... AGTCAGCCTCATCTACGGCGCCAACATTGA 1062128 36 100.0 30 .................................... GTCAGGTGCTCGACTCCGTGGAGTGGCCGG 1062194 36 100.0 30 .................................... CAACAGCGGCGAGACCGCAGGCCTGCGGAC 1062260 36 100.0 30 .................................... CAGTGGCGCGTTCTTGCGCCGCCACGCCGT 1062326 36 100.0 30 .................................... CAGACCCTGCGCCAGCGGCCGATCGGGGAT 1062392 36 100.0 30 .................................... ACCCCACCTCTTTGCGTATCTGCACCCAGG 1062458 36 100.0 30 .................................... TTCTGCAGTTCTACAGCGCACGCGACCGTG 1062524 36 100.0 30 .................................... CAGAGGCGGAGATAGCCGAGCGCGGCTGCA 1062590 36 100.0 30 .................................... TACGCTGATTTGCTTCTCGAACTCGACAAG 1062656 36 100.0 30 .................................... GCGTACCGTGGGCGGCGACGCCCTTGCGAA 1062722 36 100.0 30 .................................... AGGAGAAGGCGGCGTTCGAGAAGCGCGTCG 1062788 36 100.0 30 .................................... TCGACGTCGACGGCCGCAAGGTGCCTTGGC 1062854 36 100.0 30 .................................... AGCCGAGGTCGATAGTGCGCGTCGTGGCGC 1062920 36 100.0 30 .................................... CGCCGTCGCGATCGAGCGCCGCCTTCGCCG 1062986 36 100.0 30 .................................... GGACACGCGGTGCCACGGCGAGCGGAAGCA 1063052 36 100.0 30 .................................... CAGCGTCGAGATACGGCTGGATCTGATCTG 1063118 36 100.0 30 .................................... CCGTCCACATGGCGCGGGCCACCGCCGGGT 1063184 36 100.0 30 .................................... CAATGTGGCCTACAGCTACGACGCGCAGGG 1063250 36 100.0 30 .................................... AGGCCGCGCCGGCCGCGCCGCAGTCGGCGG 1063316 36 100.0 30 .................................... GCCGGCACGAATCCCTATGCGCGCCAGTCA 1063382 36 100.0 30 .................................... TCGACGGCAGGAAGCCGCGCGACGGGTCTT 1063448 36 100.0 30 .................................... TGCTCCACGCTGCCGGTGCGCAGTTTCTGG 1063514 36 100.0 31 .................................... CAAAAATTTCGGGGCCGAGCACGATTTTCCC 1063581 36 100.0 30 .................................... GATCCGTCCAATACGGATTTCGGGACCGGG 1063647 36 100.0 30 .................................... GAGTCTCGCGGTTGCAAAGCAACTGCATAG 1063713 36 100.0 30 .................................... CGAGGATGCGTTGTGCGCATCGACCGCCCT 1063779 36 100.0 30 .................................... AACCTGCTGCTGGTCACGCTCTTCGACTTC 1063845 36 100.0 30 .................................... AATGCTCGTGTGCCTGTCGCATTGCAAATC 1063911 36 100.0 33 .................................... CTGCACTCCAACCAGGAGGAGGCGTCAGTTGTT 1063980 36 100.0 30 .................................... CCGTTCGGCGACTTCGCGCTGCCCGTGGCG 1064046 36 100.0 30 .................................... AACCTCTACTACAACCAGGTCGCGGCGCAG 1064112 36 100.0 30 .................................... CCTCCACCCGGCCTCCGAACGCCTGGTGCT 1064178 36 100.0 30 .................................... TCGATGGCCACGGTCTGGTCCAGGATCCGA 1064244 36 100.0 30 .................................... TGGCGCGCAGGGTGGCCTGCCGGGCACGCA 1064310 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================= ================== 65 36 99.6 30 GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGACT # Left flank : ATGGCGAGCGCGCGCCGGATGGCGGGCGGAAACGCGGACAGCGTGGCGGCGGCCGCTCCGGTGCCGAGCACGCCGGAGAGGAACTTGCGTTTGGAGGAATCGACGGTCATGTTGGAGGAGTGTTTGTTGTCCGAAGAAAGGCGCGGCAAGCGCACAGCATGCGCGCGGCGGTGCGGCGAGCGCGGGGCAGGAGGGTGCCGCAGCGCCCGCGGGCCCGGCTCAGGGCTTGGGCGCGCAGTGCGTGTCGGGGTTGCCGCAGTGGGCGACGAAGCTGTTCGCGGAATCGGAGCCGGAGCCGCCGCAGCCGGCCAGCAGCAGGCCGAACGCGAGCGTGCAGGCGGCCAGCAGGGAGCGGCCGAGGAAGGACGGCACGGTGGGCCGTGGATGCGAGGTCATGGCGTGGGGGGAGGAATGGAGAGGGTTGGCATTCTTCTCGCCGACTATTGCGCGGGAGTGACGTTTGGGTAACACGGCGGTTACGGGCCAGAGCAGTACCGGTG # Right flank : TCTGATCGCGATAACCCCTTGATTCGTCAAGGGGTTTTTCGCTTCTGCGGTCCAGGAAAACATGGCGTCTGGCTAGAAAAGATCGAACTGATCGGGTGCTTTTTGCGCAGGCTGGCGGCTGCGCCCGTGGAAGGAGATGGCGCGCTCGTATTGCTTGTCGGTGAACTGGAAGATATGCACTTTGCCGCCCGCCGGCAAGGCCTGCTCCACTTGGCGGCAGAGCGTGTCCACCTGGGCCTGGCTGGTGCAAAAGCGAAGGTAGACGCTGAACTGGCTCATCTGGAAGCCCACGTCCAGCAAGGCATTGCGAAAGCCCGTGGCGGCTTTACGCTCGGCCTTGGTGATCACTGGCAAGTCGAACATCACCACCATCCACATGAGTCGGTACCCCGTCAGCATGGTTGCAATCCTGTCTGTCCGTCGGCATGCATTCAATCGGGATCGAAGCTGCCTGCGAGCGACAGAGGCAGTCCGGGCAGAGGCAGGTCGAGCCGGAGCCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCCGGCCAGTGCGCATATCCCAGTGATCTAGAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 2 2408321-2406625 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028288.1 Acidovorax avenae subsp. avenae strain AA81_1 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2408320 32 100.0 36 ................................ ATGCACGAAGGGCGCAGCGCGCCGCGCGAGCAGGGC 2408252 32 100.0 34 ................................ CGCTCCTGCTGTCATGGGGGTGAATTCGACGGGG 2408186 32 100.0 35 ................................ CCGATGCTCGGGTGGGACGTGCTGCCTCTGCTGCC 2408119 32 100.0 34 ................................ ACGTCCGACAAGGAACGCCTGGACGCGCAGATCG 2408053 32 100.0 34 ................................ TTCAGTAGTCGGGCAATGCGTGCCACTCCGTCTT 2407987 32 100.0 35 ................................ ACCAGCTCGTCGCGGGCGCTGTCGGAGCCTGCAAA 2407920 32 100.0 35 ................................ GCAAACACCCTGGGCGTTGCCCGCAAGTTCGGCAG 2407853 32 100.0 36 ................................ CTCCGCAAGGGCGACAAGTCCGTCAAGGGTTGCGAC 2407785 32 100.0 36 ................................ TCCGGTGACGACTACGACCACGACAAACCCGGATGA 2407717 32 100.0 34 ................................ CGGTTCCGCGTAGGCTGTGAAGGCCCTGAGCCGG 2407651 32 100.0 36 ................................ TCCGCGCTGCCGGCGCCCATCGTCGCCGGGATGAAG 2407583 32 100.0 34 ................................ TTTGTAGTACCCGTAGCTCTTGGTGCTGGCCTCT 2407517 32 100.0 35 ................................ GAGCCCTCGAAATCGAAGGTCATTTCGGTGAAGCT 2407450 32 100.0 36 ................................ ATTGCCAACTGCGACGTGGTGCACACCGGGCGCCTG 2407382 32 100.0 34 ................................ AGCGCGGCCTCCCCGGAGCCCACCGCCGCATCCA 2407316 32 100.0 35 ................................ GTCATGTCTGCTGCCGTGGTGATCTGCTACGCCAT 2407249 32 100.0 33 ................................ CTTCGCGGCACCGGACAGCTTGCGGAAGCGCGC 2407184 32 100.0 36 ................................ TGGTGGCGAACTCGCGCAAGCTGGCCGCCAAGCTGG G [2407183] 2407115 32 100.0 35 ................................ TGCTGCGAGCGTGGGGTCTTGGCCTGCCTGGGCAC 2407048 32 100.0 35 ................................ GACATCCTCGACATCGCCGACGATTGCGACGCGAC 2406981 32 100.0 35 ................................ ACTTCGTCGAAGCGCGCCTTGGGAATGCCGGCGCC 2406914 32 100.0 35 ................................ CCGGCGATCCGCGATGGTTGGTACGTGGTGGTTGA 2406847 32 96.9 35 ................T............... TTCCCGACCGGGCAGCGGGCCTGGTCGGCCACCAC 2406780 32 100.0 36 ................................ TCGGACAGCATGGAGCGCGTGCTGTCGATGTGCGAG 2406712 32 90.6 25 .........T.............T......G. CTGGACGTGGGCCTGCTCGGCGGCC Deletion [2406656] 2406655 31 90.6 0 .........-..........C...A....... | ========== ====== ====== ====== ================================ ==================================== ================== 26 32 99.2 35 GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Left flank : CTCGTCAGCTACGATGTCCGCTCCCAGGACAAGGCCGGCGCCCGCCGGCTGCGCCACATCGCCAAGGCCTGCCTGGATTTTGGCCAGCGCGTGCAGTTCTCGGTGTTCGAGATCGAAGTGGATGCCGCCCAGTGGACCGCCCTGAAAGTCAGGCTGCAGCAGACCATCGACCCCGCGCAGGACAGCCTGCGGTTCTACTACCTGGGCAACGACTGGCAGCGCAAGGTGGAGCACGTGGGCGCCAAGCCGGTACTGGATTTGAACGGGCCGCTGGTGCTGTAGCGTCTCTCGTTCCCCCTCCTCTTCATTCCTGCAACCATCCGGCGCGAACCGGAAGCGACTGCCTGCGCCCAGGGGAGGTTCGCAGCGTGGCAAGTGATTGATGTGCAAGGGGATTGTGGAACCGTGAGCGGCTTTGCCCGGCGAAAGCCCTGCTCTATGGGCAGGTTCGCGCGCGTTGGCGGAAAAGTGGAGGAATGGCGCGGGGTTATAAAGACGCC # Right flank : TCGACATCAGCGGCACAGGAGTTGGAAACCCATACTGGAATCCCACGCGCCCGCCTGTCGCCCCAGTCCGACATCCCCCCAGCCCTCCTCCGCTGACACTGCCCCCATGCCACTGCACCGCCGCACCCTATACCGCGCTGCCGTCCTCGCCCTGGGCTTGGCAGCCACGCTCCGCACCGCCTGGGCCAGCGGCAGCCAGAACGACAATCCAGAGGGCAACGCCAACCCCCTCATCGCCGAGCGCTGGCAAACCCGCCCCGTCGTGGTAGTCGTCCCTCAGGAAAACAATTCCCTCCTCGCCAAGGTGCGCGCCGCCCTGCAGGAACCGGCCCTGCGCGAAGGCTTCCGCGAGCGCGACATGGTGCTGTTCACCGTGGTGGCGGGCCAGGGCCGCCGCAATGGGCAGGCGCTGGGGGCCGCGCGCACTGCGGCGCTGCTGAAGGCGCTGAACCTGGACGCGATGGGGCCGGCCACGTTCATCCTCGTGGGCAAGGATGGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.90,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 5329010-5330974 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028288.1 Acidovorax avenae subsp. avenae strain AA81_1 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================================================================= ================== 5329010 32 100.0 35 ................................ GCGCGGCCGCAGCACGCGGGTGACGATTTCCACGG 5329077 32 100.0 33 ................................ CACCCGGGCCGGCTTGGTCTGGTAGGTGGTCTG 5329142 32 100.0 38 ................................ TGGATCGCCGGGGTGGCGCTGGCGGTGCTAACAGTGTT 5329212 32 100.0 34 ................................ GGCGCCAAGGTCACCGTGGCTGCAATGTCCCTTG 5329278 32 100.0 36 ................................ ACGGCGCCGGTCTGGGGCCTGCGGGCGCTGGCCAAG 5329346 32 100.0 34 ................................ CGCCAACTTGGTGGCGAACCAAGTTCGTGAAGAA 5329412 32 100.0 36 ................................ GACCCGCCGCACCTCGTGCGCGCCGGGCCGCGGTCC 5329480 32 100.0 36 ................................ TTCCCGGTCTCAGGCGAAGAACGAAGGCCACGGCCC 5329548 32 96.9 36 ..............T................. CTCGCCGAGGACCATGCCGGCGCGGTGCGCGTTGTC 5329616 32 100.0 34 ................................ TTCCACCCTGAGCCAGATAAGCCCGCTCCCCAGC 5329682 32 100.0 35 ................................ AACTGGGATCTCAACAAAGAAGCCAACTGGCGCAT 5329749 32 100.0 35 ................................ AAGTCCCCAGCAAGTTCCGAGTCACCGTGGAAAAC 5329816 32 100.0 33 ................................ TGGAGCTTCGTGAGCTCGTGCTCCGTGACCCCT 5329881 32 100.0 34 ................................ GCCACGTTCATGGCCGTGATGGCTTCCCGCAGTG 5329947 32 100.0 35 ................................ ACCTCGTTGAACTCGTAGAAGGGCCGGCCCTGGGT 5330014 32 100.0 36 ................................ TTCGCGAAGTCGGCCTCGACGACCTTGGCGCCGAAG 5330082 32 100.0 35 ................................ GGTCGATATGCCTGTGCAGGCATTGCAGCAAGCGA 5330149 32 93.8 36 .........T.........T............ ATCACGAACCCGCTCGGCTTGATGGGCGCGGCCTGC 5330217 32 90.6 34 .........TA........T............ TGCATGAGCGCGCCCACCAGGCGGATCACGTCGC 5330283 32 90.6 34 .......T.T.........T............ ATCGGCCGCGGCACGTCGCTGCGCGACTACCAGC 5330349 32 96.9 38 .........T...................... GGTGCGTTCCGTGCGGCTGCCGGAGAGCATGAGGCCGA 5330419 32 93.8 35 .........T...........G.......... GACCAGGCCACCGCCTACGTGGTGCAGCACGACGC 5330486 32 93.8 35 .........T..T................... TACGCTCCGGGCTCCCACGCCAGTCGCTGCTGAGG 5330553 32 96.9 38 .........T...................... CCGATCTGCAGGGCCAGTGCATCGCGCTCGGCGCGCAG 5330623 32 96.9 34 .........T...................... TTGAACTTGGCGAGGTTGTTCTCGTGGCTCTGGT 5330689 32 96.9 36 ....................C........... GAGATCGAGCTGCGGGAAACGGATCTGTCGCTCAAG 5330757 32 93.8 89 ........................A.A..... GTCGTGTCGCTGGAATCCTGCGAGAGGACTGCGTGTTGGTGCTTGGGTTAAAACTGCTCCAAACGTGGATCAGTGACGCGCTTTGCGAC 5330878 31 84.4 33 .......A.A...G...........-...G.. TACCCCTTACAAGGCGTAGGTCGGCAGGTCAAC A [5330891] 5330943 32 81.2 0 .........T..AT.......C.TA....... | ========== ====== ====== ====== ================================ ========================================================================================= ================== 29 32 96.8 37 GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC # Left flank : CAACGTGGTGCTGAACGTGGCCTTCGGCCAGCCCACCATGGCGGTGGACACGCACATTTTCCGCGTGAGCAACCGCACGGGCCTCGCCCCCGGCAAGAACCCGCTGGCCGTGGAAATGCAGTTGCTGAAACGCGTGCCCGCCGAATATGCCGTGGATTCGCACCACTGGCTCATCCTGCTGGGCCGCTACGTCTGCCAGGCGAGGAAGCCGCGCTGTTGGGAATGCGTGGTGGCGCAGTGGTGCGACTACCAGCCGAAGACGGCGGCGCCCTGAGGCCGGGCCCTGCTTCCTCTCCTTTCTTCCTTCCCTCTTTTTGCAGAGCGTTGCGAACCGGGAGTGACCGGCTTGTCCGCCTGGGGTTCGCGCGGGGGCAAGTGGTTGAGGGCAAAGGGAATTTTTACTGGGTGGCGGACGGGGCGCGCAGGCTGCGGGTCGGTTGGGCGGGGTTCGCGGATGTGTGGGGGAAATGGCTGGAGTGGCGCGGGTTTATAAAGGTGCC # Right flank : CGACGAGAGGCGTCGCGGCAAGATGTCCGTTATCGGTCCAAGCGCAGTGCGTGCGTGAATGCGGCCAACCGCCTGACCTGCCCCGCCCCACGCATTTTCGGGCGCTCTCACATCGCAGGCTCGCGCATCCCCATCCGCATCGCCACCCGCCGCTCCACCGGCAACCCATGGGCAGCCTCCACGTCCATCACCCCCTGCAGCCGCGGCCCGGGCGGCGAGACCGGGCGGAACCCCAGCCTCGCATAGGCCGGCGCGCTCCACGGCAGGTCGGCGAAGGTGGTCAGCGTCAGCGCCACCAGGCCCTGCGCCGCGGCATGCGCCTGCGCGGCCTGGATGAGTCTCGTGCCGATGCCCATGCGCTGCCAGTCCGCGTGCACCGACAGTTCCCAGAGATGCAGTTCCTGTCCGAAGACCTCGGCGTCCAGGAAGCCGACCAGGTGGCCGGGCCCTGCCTCGGCCACCCAGGCCGCGCCCCGCAGGATGAGCCGTTCGTGTTCCGC # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.14, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGTGCGGGCGCGTGGGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-26] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //