Array 1 9130-12026 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTC02000043.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0354 NODE_43_length_40850_cov_29.218869, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9130 29 100.0 32 ............................. GGAACTGGTCAGCGGCGAAACAAAATCCGTGA 9191 29 100.0 32 ............................. CTATCGGCAATTTTCATCAGGCCCATTGCAAT 9252 29 100.0 32 ............................. GCGTCCAGCATTGCGCTAATAAAACTGGCCTG 9313 29 100.0 32 ............................. CCGGTCATAACAAGTGGCTTCGACGACCCTTT 9374 29 100.0 32 ............................. ATTGACGATTTTTCGTTAATAACGTCGTTATC 9435 29 100.0 32 ............................. TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 9496 29 100.0 32 ............................. CCCTCGCGCAAAAAGCGGTTGCTGTCGTTGAC 9557 29 100.0 32 ............................. AATCTGCCAACAGGCGCTCTGTGTATCGGCGC 9618 29 100.0 32 ............................. CTCCCTCTCCGCGTTTTTGCGTCGGCTGGGGA 9679 29 96.6 32 ............................T TTACGAGTTGGACGGTGAGTTTTATCACCGCA 9740 29 100.0 32 ............................. ATCCGCAGCATTACGTTGACGAACAAGCGAGA 9801 29 100.0 32 ............................. TTTCCATTTTAACACCTGCTTAATTAAGAGAT 9862 29 100.0 32 ............................. AGATTTTGCAGTGAACCACGACCGATGACGGA 9923 29 100.0 32 ............................. GCGTGTAAAATCACAGGCCGTCAGCCTAACGA 9984 29 100.0 32 ............................. CTGTCGCAAAAGCGGGTCTTATGTCTGCGGGT 10045 29 100.0 32 ............................. CCCCTGAGCGTTCAACGGCAAATAGCGGACAC 10106 29 100.0 32 ............................. TATACAGGGCGTTACCCCCAATCGAGCAGCGC 10167 29 100.0 32 ............................. GGGATCGGCGTCTGTGAAATTCTGTGGAATAC 10228 29 96.6 32 ............................A ATATTTAAAGATATGCAGAGAATTCTTTTGGC 10289 29 100.0 32 ............................. TGCGAATTTACCGTCGGCAAAACCGCGCTGAT 10350 29 100.0 32 ............................. CCAATATTCTCCTGATTATTCCGTTTATTTCC 10411 29 100.0 32 ............................. GGTTCACTCAGTGGAGCCTTCCACCTGATAAG 10472 29 100.0 32 ............................. ACGCGAACGCGGATATAAACTCAACAGCGCTC 10533 29 96.6 32 .............T............... AATTCCGTTACTATCTCGACGACCCGCGCGCG 10594 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 10655 29 100.0 32 ............................. CGGGGTTTGCCAACGGGGGTTATCTGGTATTT 10716 29 100.0 32 ............................. TTGCGCGCTGAGCGGGCAGAGTTACAGGAACG 10777 29 100.0 32 ............................. GCCGTCGCGATGGCATCAGGCGTGGTGGCCGT 10838 29 100.0 32 ............................. ATCGAACAGATGCGTCATAGCGGCATGGGCGT 10899 29 100.0 32 ............................. CTGAATAAACCTGTCCAGCTTCTGCCACTCTT 10960 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 11021 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 11082 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 11143 29 100.0 32 ............................. AATTCCGTTACTATCTCGACGACCCGCGCGCG 11204 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 11265 29 100.0 32 ............................. AAAGCGAACGATGCGCTGAAAACGACAAAACA 11326 29 100.0 32 ............................. CAGTGAAATAAAACCAACGCACTGGGTATCCC 11387 29 96.6 32 .......T..................... CCCACCGCCCAGCCCGGATATAGTGAACTGGT 11448 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 11509 29 100.0 32 ............................. ACTGGTATATCACCAATCATGAGCAATTCTGG 11570 29 100.0 32 ............................. ATTTGCCGCTTCACTAAACCGCGCGCCGGTGC 11631 29 100.0 32 ............................. GTCTGGCCGGATGTGGTCGCGGGTTGGAACAG 11692 29 100.0 32 ............................. TACGACGTCGCCGGGGTAATCGGTTTTTTGTT 11753 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 11814 29 100.0 32 ............................. TTTATCGAAAATCAATGTTCAACTCATTGTTT 11875 29 96.6 32 ........G.................... CCGGAAAACTATCTCTATCGCAGGCTGGATAT 11936 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 11997 29 96.6 0 ............T................ | A [12024] ========== ====== ====== ====== ============================= ================================ ================== 48 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGGGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCTGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7956-7317 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCTC02000083.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0354 NODE_83_length_13279_cov_28.373175, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7955 29 100.0 32 ............................. AGCACCTCGGGGACGATATTATTGGGACTATA 7894 29 96.6 32 A............................ GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 7833 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 7772 29 100.0 33 ............................. TGCCGCGTGTCCGCCCCGTTGTCCAGCATCTGC 7710 29 100.0 32 ............................. AGTTGAGTAAAAAATCATGACATCACGCTACA 7649 29 100.0 32 ............................. CCGCGCTTATTGATCAGGAGAAAATAAAAAAA 7588 29 100.0 32 ............................. GGTCCGGTGTGGTCTGCCGAACCCGGCACCAG 7527 29 96.6 32 .................G........... ATGATGCGCAATTGCCGCCGTCGTCGTTGAGT 7466 29 96.6 32 .................G........... GAAGAGGCGAAGTCAGGGCGAGAGAGGCTTTG 7405 29 96.6 32 .................G........... TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 7344 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GTGTTCCCCGCGCCAGCCGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAATTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCCGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //