Array 1 42508-39391 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHPQ01000030.1 Bifidobacterium longum subsp. longum strain MCC10007 contig0030, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 42507 36 100.0 28 .................................... CCGCCTGGGCGAGCTGTTCGCCGCCAAG 42443 36 100.0 28 .................................... AGACCCAATGCGAGGCGCTGAACATGCG 42379 36 100.0 28 .................................... TCCACCGACGTGATGGGCAACTACACGA 42315 36 100.0 28 .................................... AGTATGGGCGGACGTTCGCAGATATTGA 42251 36 100.0 29 .................................... ACGATACGACCATGGGCAGGCCGACGCGA 42186 36 100.0 29 .................................... ACCAGGACCTTGCGGACCAGGACCGCATG 42121 36 100.0 28 .................................... ACTATGGATATCGACATGAAAATCCTCC 42057 36 100.0 28 .................................... CTTCGAGGTTCCGGTAATGGCTGGGCTT 41993 36 100.0 28 .................................... AGCGTGAACGCAAGGCCATCGCATATGT 41929 36 100.0 28 .................................... CAGTGTTGCCGCTTTTTCGGGGGTGTCG 41865 36 100.0 28 .................................... GTAAAGGGTGGCGTTTTGTCGAAGTCAC 41801 36 100.0 28 .................................... GTCGTGTCGGTATCACCGTCACCGTCAC 41737 36 100.0 28 .................................... GGTCAAGTAGGGTCATGCGGGGTCAAGT 41673 36 100.0 28 .................................... GGTTGGTTCGATGATGCAACACCTATAC 41609 36 100.0 28 .................................... CTTCCTTTCCATTATTGAAAATCTCCAG 41545 36 100.0 28 .................................... ACATTTTGCCCACATTATCCAGATAAAA 41481 36 100.0 28 .................................... TTATCAATGAAGTTGCGGACGATGTTCG 41417 36 100.0 28 .................................... CGCGAACTTAACGGGGAGCCGGCGTTCC 41353 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 41289 36 100.0 28 .................................... CATCGAGACGACGCGCGAACTTGAGGCC 41225 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 41160 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 41096 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 41032 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 40968 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 40903 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 40838 36 100.0 28 .................................... GCCAACGGCGCGTACACCGGCAACTTCA 40774 36 100.0 28 .................................... GCCAACGGCGCGTACACCGGCAACTTCA 40710 36 100.0 28 .................................... AAGAAGACCGCGACTATCGGCTACCAGG 40646 36 100.0 29 .................................... GTGGGAATCCTGTTGAAGTGGGGTGAGGA 40581 36 100.0 28 .................................... AGGAGGTTCAACGCAAGTATTTCACGGC 40517 36 100.0 28 .................................... AGTCATTTGGTGTGCCTTTCACGATGAT 40453 36 100.0 28 .................................... TTGCATACGATGTCGAATATCCCCTCTC 40389 36 100.0 28 .................................... TGTCCTGCATTTCGTGCAAGACCGCTTC 40325 36 100.0 28 .................................... TGTACGCTGACGAGTTTCCTGTTGCTCA 40261 36 100.0 28 .................................... CGGCCCAACGGAGGTAGGTGCTGCGATG 40197 36 100.0 28 .................................... CCAGTTCGACGCGTAGGCGCGAGTGTCC 40133 36 100.0 29 .................................... CGCCTCGCCGCCGCACGAGAACGAGTCAA 40068 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 40004 36 100.0 29 .................................... CCCTTGCGCGTACTGTGCTTGTAGGTGGC 39939 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 39875 36 100.0 28 .................................... CGGGTAACAAGGTGGACATGCTCATTGA 39811 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 39746 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 39682 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 39618 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 39554 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 39490 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 39426 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 49 36 99.7 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : GCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTACGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCAACTGAATATCTTTAAACTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 79967-80311 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHPQ01000033.1 Bifidobacterium longum subsp. longum strain MCC10007 contig0033, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 79967 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 80033 27 96.3 54 ........................A.. ATCATCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [80039] 80117 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCGCGGTC 80177 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [80225] 80225 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 80282 27 81.5 0 ......A.......C.....C....CG | GC,C [80300,80304] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 87.7 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CCATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTTGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACTGACAACTAAATGTACATGGCAGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCTCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTGCGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGCTTTAGTCCTCGAACGGATCGAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //