Array 1 1714638-1717313 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048003.1 Lacticaseibacillus paracasei strain CACC 566 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1714638 36 100.0 30 .................................... TACAACGAAGCCATTCGGAAATTAGCAGCG 1714704 36 100.0 30 .................................... TTGCTCATATTGGAATCAATGTCTTTCGCG 1714770 36 100.0 30 .................................... CAGTAGCAACATAAACCCTAGTACCAATAA 1714836 36 100.0 30 .................................... CAACCTTACAGAAGTTCTTCAAGAGCGGTT 1714902 36 100.0 30 .................................... GGACGAGCAAATCTAACCGCTTCGGGCCAA 1714968 36 100.0 30 .................................... CCGAAGGATAAGCCAATATTTGTACCAGAC 1715034 36 100.0 30 .................................... GACTTCGAATGCTGAAGAACTAGCTGATCA 1715100 36 100.0 30 .................................... GGGGCACCTCGATATACGGGTACCCCATCT 1715166 36 100.0 30 .................................... CGAATTTAAGACGATGAAACTGCCGTATGG 1715232 36 100.0 30 .................................... AGAGTTTATTCAGCATGATAGTACCAAATT 1715298 36 100.0 30 .................................... TCAAATAGCCTCTTCGAAAGTTAAAGGAGG 1715364 36 100.0 30 .................................... AGCGTGGCGTAGCGCTAACTTGTCATTTTT 1715430 36 100.0 30 .................................... AAAAATTGGGGATTGGCAAGATTACGACTG 1715496 36 100.0 30 .................................... TATTTCGCACTTCCAAAATCATAGCCATCA 1715562 36 100.0 30 .................................... CGCCTGAACATTGCATCGATGGTTTGATCA 1715628 36 100.0 30 .................................... GTTGGTGGCAGCGATTCATTGCTGACGTCC 1715694 36 100.0 30 .................................... AACAATTGAAGCGGTGGAAGCTATAGCCGC 1715760 36 100.0 30 .................................... ACGTCGCCGCGAATTTTCCGCATTACCGTA 1715826 36 100.0 30 .................................... TCGACAATTGTGACACGGGTTTCAACGTCA 1715892 36 100.0 30 .................................... AACGGTGCTGCCAACTGGGTGCTCGCGCGC 1715958 36 100.0 30 .................................... TTGAGTTCTGATTGTTAGTTGTATCTTGGT 1716024 36 100.0 30 .................................... CTTCATCTAATGATGAATTAACTAACAAGT 1716090 36 100.0 30 .................................... AACGGTGCTGCCAACTGGGTGCTCGCGCGC 1716156 36 100.0 30 .................................... CTAACCACTGGACTGGCTGGAGGGGTCGCC 1716222 36 100.0 30 .................................... CATCGTACCCTCACAAAAGCTAACGCCGGC 1716288 36 100.0 30 .................................... CTTTTATGAAGAACTGTTTACACCGGTTAT 1716354 36 100.0 30 .................................... TCTTCAAGGTCTTGTGTGGCAATAGCGTTT 1716420 36 100.0 30 .................................... TCAATATAACTCGCATCATAATCAAGATTA 1716486 36 100.0 30 .................................... AAGGTGAGCAAATCTTTGATGTTAGTCAGC 1716552 36 100.0 30 .................................... ATCTCACTGATGTTATCGGCGATTTACGAG 1716618 36 100.0 30 .................................... GGGATTGTGGGCTGACGATAGATATACGCT 1716684 36 100.0 30 .................................... CTAACCTTGGCTGTGAATACTGGAGGCGTC 1716750 36 100.0 30 .................................... GTAAAACCATCATTCGTCTTGGAGTCAATC 1716816 36 100.0 30 .................................... CATATTGACGTTGTGAACGTTGCATTTCTG 1716882 36 100.0 30 .................................... CTTACGTCAACGGTTATACCGTGCGCAAGG 1716948 36 100.0 30 .................................... AAGGGTTAGCGCCACTTAATCCTGACAACT 1717014 36 97.2 30 ................................A... AAAGGCTTACGTTCAGGCGATTGAATCCGG 1717080 36 100.0 30 .................................... ACCCAGTTTCCTCGTTGCGCAGATGTTTGT 1717146 36 100.0 30 .................................... CCGAGAAGGTCGGACGATCAACTACTTTCG 1717212 36 100.0 30 .................................... AGGAAATTCGAGTTCTTCCCGCAATTGATG 1717278 36 83.3 0 C.............C..............G..TTC. | ========== ====== ====== ====== ==================================== ============================== ================== 41 36 99.5 30 GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Left flank : AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGTTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCGATGTATTTACTTCAAGATCCATTTTTGAGCGACTTGCCAGTCACGGTTGAACCAGGTGGTAAGCTTGAACAAATCATGAAATACTGCAACGTTCATTTTGATGAGGCTGTCACGACAGAGTCAATCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAATTGGAGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGCCAGAGATTTCTTTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTCATTCTCATCGAGTTCTCAAAAGTGAACCGAAAGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGTGAACTAGATTGATTAGGAGATTGTGTGAAAACAACG # Right flank : CAAACAGCAGTGAGACTAAACTGAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAACCAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCCGTCTAAAGCAATATCGTAGTAACCACATACACTCATGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATATATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGCGCCACACTTTTGGTCAGCATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGCACGACTAGCCAGACGAGCAATGCTAAGGTGAAGATTAATACCGGCGCCGATGCGAGTGCCAAGGTGCCGGCAGCCGGCACCTTAGTGATGCGTCAGCTTTATGCTGCACCACACGGCAAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //