Array 1 56-1488 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGYR01000103.1 Pectobacterium carotovorum subsp. carotovorum strain Ecc15 Contig_109, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 56 29 100.0 32 ............................. TGCGGTTTTCGACGGGCTTGTAACCCATAGAC 117 29 100.0 32 ............................. CCAGTGGGTTTCCAGTGCTCTTCGCCCCACGG 178 29 100.0 33 ............................. TTGATAATCTTGTAGGTCAGCCCGGATGCAGAC 240 29 100.0 32 ............................. CTGGAGGACGTGACGGCTATTGAGCGCCTTGG 301 29 100.0 32 ............................. ATATTGAAGGTGACGCGCTATATGGTGTTAAA 362 29 100.0 32 ............................. TCCATGGCGGATCGGCGTATATCAAGCGGTAC 423 29 100.0 32 ............................. CACTTACCGGAGGTAATCATGAAAATAGATAA 484 29 100.0 32 ............................. CCGCGATTACTGGGAGAGCAAATTATCTGTAA 545 29 100.0 32 ............................. GCGTAACCCATTCCTTCCATGTCAGATTGAAC 606 29 100.0 32 ............................. TGGGATGACCTCAACGAACAGACAGCAGCCGA 667 29 100.0 32 ............................. TATTCACGCGTTACCTGATTGATCTGATAAAC 728 29 100.0 32 ............................. ACCATGAACCGCACTGGTCGCGCTAAGGGGTT 789 29 100.0 32 ............................. CGATCGCGCAGCTGGTGGTCGACGAATGGCGC 850 29 100.0 32 ............................. ACATGCTGATTTTACGAACCGGTATTTATGAC 911 29 100.0 32 ............................. CTGATGCCGCATATCACACCATCATTCGATGA 972 29 100.0 32 ............................. TTTTTGCTAGCAGGTTTAATCTCCGAACTGTA 1033 29 100.0 32 ............................. GGCAGTCTGGCATTCTTCTCTGGTTCATTGAA 1094 29 100.0 32 ............................. TGCGTTGCTTTTCTTGCCCATCAGTAACACTG 1155 29 96.6 32 .......A..................... GCTGATGCGGATAATGTTTCTCCGCGTGATTT 1216 29 96.6 32 .............C............... GACGGCCTCGGGTCGGGCGTTCATCTGCCATT 1277 29 96.6 32 .............C............... GCACAGAGCGTATCGCCTGTTTCACCTCTTCC 1338 29 93.1 32 ............TC............... TGGCACCTCACGGGATGCCTATGCATTTAAAA 1399 29 96.6 32 C............................ GCCATTACGCCTCCGAGGTTACTGTCGTTGTA 1460 29 93.1 0 .............C.............T. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.9 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : CGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAAATCTCTACTTTTAGAG # Right flank : GGGCTTATACCCCTTATTGCATGTTGGTCTAAATATCCCCTACACGGGGTCAAATTCCGCTTCTGGTTGGCGTGATGGGGGATTGCGTGTCAGTATTAAAGCACGCTATTTTTGCGCCCACCGTCACGGTGAGGCGCTATGCCAATGATTTTTGTCTTCCATACGCTACCGTAAGGAGATGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCATAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGGTATGATTTCACCCGCATTAGCCCTGCCGAACTGTATGACACGGTTGAAGGCCTTGTCAGCAGTGGTCGGTTAGGGCGTGAAGAAGGGTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGAGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCGAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3160-2155 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGYR01000078.1 Pectobacterium carotovorum subsp. carotovorum strain Ecc15 Contig_82, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3159 29 100.0 32 ............................. TTAAATCCTTTTTCACTACGCAGGATTCACCT 3098 29 100.0 32 ............................. CCGCCAAGTTTGAGCGGCTTTTTTAATGCCCC 3037 29 100.0 32 ............................. TCGCATCACCTGTTCTTGTTCCAGATCGTGAC 2976 29 100.0 32 ............................. CCGCCATTAAAATACACGGTGAGTATGCATGG 2915 29 100.0 32 ............................. AGGCCATGTTGGATTACGTGGCCGCTCAGAAA 2854 29 100.0 32 ............................. GCAAATCGTCTTTTTGTGCGATCCCCGCTGCC 2793 29 100.0 32 ............................. GAAATGAAAAAACCACAGCGAGACATGACACC 2732 29 100.0 32 ............................. GTTGCCGAGAAGGCGATCAGTACATTCCTGTC 2671 29 100.0 32 ............................. GGATCGATCCTTAAATTGCCGTACATGTTTAT 2610 29 100.0 32 ............................. ACTTTGTTATTCTCCGCCTTACTCAGTTTCTC 2549 29 100.0 32 ............................. GCCTTTCGGTTGTACCGGTGTACCAGCCCCAG 2488 29 100.0 32 ............................. CATTTATTGATGCAATGCGAATAAAGTCCGGC 2427 29 100.0 32 ............................. AACAAAACAGACGGCGCAGGCTGGAATGGTGA 2366 29 100.0 32 ............................. CGTTATAGGCAGGCTCAAGAAACCCGATAGCG 2305 29 100.0 32 ............................. CACAAAAACGCTGATGGAACCTACAACGGCGT 2244 29 89.7 32 ........T....T..............T AACAATGCCGGAACTGAAACCAGACCGCGCAA 2183 29 89.7 0 ............T............G.T. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AATTTTTTATGCCGAAAAAAGTGTTATAAAACAAATCTCTACTTTTAG # Right flank : AATAGTAGAGGTGTAAATCATAACGGTTTCCATCTTGTCAACTCGTTCCGTTTACGGCATAGTGTTTCCAATTTGGAAACAACAGGTAAGGCATCAGGATACATGTTATTTCGCGGGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGATGACCTATATCGGGTGATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCCAGCCTGGATAGGATGAAATATCGGGAAAAGTGGTGGGTTATTGATATTGGTGGCGGGCATCTTCGAGTGATGTTTTTTGCTGATTTCGAGCGGGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTACGACAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCAGACGCCATCAAGGCCGCTAACAACCTGACGAGTATCGTACCGTTCCTCGGGGGTAGCACCTCGCGTAAGGATTATGAGGATG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1208-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGYR01000072.1 Pectobacterium carotovorum subsp. carotovorum strain Ecc15 Contig_76, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1207 28 100.0 32 ............................ CGGAAAATTTGACGCGTACATGGCCGCACAGG 1147 28 100.0 32 ............................ TTAACCCGCAATGCCTGCGCTCAGACAACGTT 1087 28 100.0 32 ............................ ACGCCCCCGCAACCCCGGTTCGTCCGGTGTTC 1027 28 100.0 32 ............................ AGCAGACTAGCGCCGGCGCTGTCTCCCGATGC 967 28 100.0 32 ............................ TTTCGAAAATCCGTCATCGCAACTTTAACGTG 907 28 100.0 32 ............................ CGTATTCGGTTAGTTGGCTGGCGCTGCTTCGC 847 28 100.0 32 ............................ CGCTCAGGTGTGGTCCGCATACGAGCTATTTA 787 28 100.0 32 ............................ AGAGAGCCAATATAAATCAGTGGCTCGTTGAT 727 28 100.0 31 ............................ CCCAGTGATAACCCTCGTCTTTGTTGACGAA 668 28 100.0 32 ............................ TGCGGGTAACAAATGAAATACCGGAGCGAGTT 608 28 100.0 32 ............................ AATGGCAGCATTATCGACAGAGGTTAAAGCCT 548 28 100.0 33 ............................ CGCGAGTTTCAGACCATTGAGGGAATGACTCTC 487 28 100.0 32 ............................ AGTGCTCCAGCGACGAGCTGTACGAGTTGAAA 427 28 100.0 32 ............................ TCAATAAAGGCGGCGCGGCTGGCTATATCGCT 367 28 100.0 32 ............................ AGAACGAAGCGAAACGCTGGTAAGCATCTGTG 307 28 100.0 32 ............................ GATGGTGGCGCATGGTAAACAGCATATCGTAT 247 28 100.0 32 ............................ TTCGTATCCATGACGTGCATTACGGTAATCTG 187 28 100.0 32 ............................ TTGGCGGCAAATTGCTCTGCTCTCTCGGCCAT 127 28 100.0 32 ............................ ATTGCAAAGTTTTCGTGCAACATGGTCCTGAC 67 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 20 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGCGTGACAGAGGTGCCGGTTCCCAACATCACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAATAAATCGCAAGCTAATTATTTAATAAGAAAAAATGTAATTTTCAGAAAACTAACGGAAATCAGACTATCACAGCCGTATATAAAAAATGATGACTGCAAAAAATATTACCGAGACGCAGACCCTTTTTCTTTGGCCTATTTCACAGGCTTAACAATCAACGAGTTACCGCTGAGCTGAAAAAAAGGGTTTTTGTGGCGAAAACGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCAACG # Right flank : AAGTACAGGCGCTTGGAGAAACTTTACAGATTTGTTCACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10160-10966 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGYR01000072.1 Pectobacterium carotovorum subsp. carotovorum strain Ecc15 Contig_76, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10160 28 100.0 32 ............................ GTCAGCAAAATTTGGTGAGAATGTGAGAATAA 10220 28 100.0 32 ............................ TCTCTCACTATTCGGCACTACTTACCACGATG 10280 28 100.0 32 ............................ ATGTACCAATGCCGGGTAATCCCCTGCCCCAT 10340 28 100.0 32 ............................ TCCCAGCCTAGCCGCGGCTGTTTACTTGCAGC 10400 28 100.0 32 ............................ TTGTTCGGCGCATTGCGTATCGCCTCCAGTTG 10460 28 100.0 32 ............................ TGATCCGCAGCGCAAGCGCTGACATAACGCAT 10520 28 100.0 32 ............................ TAAGATACTTCTCCACATATTCATCCAGTTCT 10580 28 100.0 32 ............................ TGCTTTATGGGCGCATGAATGAAATTACTGAA 10640 28 100.0 32 ............................ TTTCAGGAGGATGTCGTCTTCAAACGTGATAT 10700 28 100.0 32 ............................ CTTTGATGACACCAGTCGGGTGAATGCTTCTT 10760 28 100.0 32 ............................ CCCGATGCACAGATGTCTGCTGAGACACAGGA 10820 28 85.7 32 T.........T..CG............. GTTTTGGCTTAGTTATCATCCTGATAAGTTTG 10880 28 96.4 32 .............C.............. GCAATTGCTGAAATCGATGCACAAGCGGCTGT 10940 27 82.1 0 ...........T.C.......-....TG | ========== ====== ====== ====== ============================ ================================ ================== 14 28 97.4 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AAGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGCGTGTACAGCCGTACCTAACGGTGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTGCGCCGACGCTCGGTCAGCAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGTATCCCCGATGCCGTGGAAAAACGCAGCGCACTGCCATTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGCTGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACGCCCCTGTCGCTGGCCGCTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGCCCAAAAAGTCATATTCTCTTTAACAATCTGGTGGTTAGCGTAAAATCTTAACG # Right flank : GCTTATCGGGATGCGTCGCTGGCGCGACACATTTCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTTCCGAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCGGCACCAAGCGATTAAAGAAACTCTCAAAATCCTGCCGCACCGTAGGGTCGGCATTTTCGTTAATCGTTAGTGCCGCCGAGGTGTGCTTGATGAACACCTGCATCAGCCCGACTTTTATCTGACGCAGTGCGGTGACCTGCGCCAGTATTTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGAGTCCCCTGCTATCAGGCTTCACGCGCCAGAATAGG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 242-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGYR01000153.1 Pectobacterium carotovorum subsp. carotovorum strain Ecc15 Contig_165, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 241 28 100.0 32 ............................ ACCAGAAGCACTGGATGCTGACGAGTAAAGTA 181 28 100.0 32 ............................ ATATCGCACGGGCATTACGCGTTAATTCGCTC 121 28 100.0 32 ............................ AACTTTGGCGTGGGCATGGATGAACAATTTGC 61 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TTAGAAAAGTACAGGCGCTTGGAGAAACTTTACAGATT # Right flank : AAGTACAGGCGCTTGGAGAAACTTTACAGATTTG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 57626-57882 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGYR01000089.1 Pectobacterium carotovorum subsp. carotovorum strain Ecc15 Contig_94, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 57626 28 92.9 32 A...........G............... AGTCGTCGTACAGATGACGAGAACCAGCGCGA 57686 28 96.4 32 ..G......................... ATCACTACCCCGTCGAAATATCACCCGACCCG 57746 28 100.0 21 ............................ CACGCGCCCTGATTCAGGCGG 57795 28 89.3 32 A..T........G............... TCCCGTTGTTTGATTAGCGCCCGAGTTAATGC 57855 28 89.3 0 .............C......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 93.6 30 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AACCGACGGACGTCGGCGGCACGCTGTTTGGCGGCATGTTTAGCGCGATGTTCGATCTCATCTCCTGGTCTTGCGCAGCATCGGGTTTCTGCTTTCTGGCGCTCTTTCGGCTTTCAGGATGGCGTGTTGCCTGGATACTCGCGGGGCTGGTGCAAATCGGTATCAGCGCCCTGTGGCGCATTCAATATTGGCAGGATTATGAAAACGACAATGTGATACTCTCCCCGATGCCCGGTGAGCTGTATGTTTCCATGCTGGTAGGCGCAGGCATGGCCGCCATCGGCATCGTGAAATATCGACATGCCCGGCACAACCCAGTCGCTCAACGCCCAACCTATGCGAAAGCGGTCGCTGCATTGCTGCTCGTTGCGCTTTATTTCGCGCTCCCGCTGCATCTCTACCTACGTGAACCTCTCCCCTACTGCGCCTTTAGCCCTGACGGCCAGCAGTTAAGTATCTGTCTGGGAGAGAATGACGAGCGGATTATTGTGGAGTGATGG # Right flank : AATAAAGCTAACCTAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAACTGGTAGTCTGTTTGGCTCACTGCCTGACACTGTTTAGGGAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTCGGCTACCATGCCCGCCTGTCGCCGAACGCAGTCGGGTTGGAATGCCTAGGGTTAATTGAAGTGCGGTTGATCAACCATACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGATGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGACCTGCCCGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAAAACAAAAGCG # Questionable array : NO Score: 3.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:-1.5, 6:0.25, 7:-0.22, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : ACTGCCGTGTAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.17%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 64314-63865 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGYR01000089.1 Pectobacterium carotovorum subsp. carotovorum strain Ecc15 Contig_94, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 64313 28 100.0 32 ............................ ATACCGCAACGCCCAGCAGGATGAGCAACGCA 64253 28 100.0 32 ............................ ACATCAGATCAACCGGCTCGATACCACGCCAT 64193 28 92.9 32 ...........C.C.............. AGTCCGATCTTCATCACAGCTGACGCCTCTTG 64133 28 92.9 32 ...T.........C.............. AGAAGCTATCGCGGCGCGAAACGAAGCGCTTT 64073 28 96.4 32 ...........C................ TTGATATCACGCTTGAAGTAGCTGACTGGCTC 64013 28 100.0 32 ............................ TCTGACAAATCATTAGGTGATGTGAACTTTCG 63953 28 100.0 33 ............................ AATTGCTATTAGCTGGCGGATTGCTGGCATCAG 63892 28 78.6 0 ...........C.C......T...TCC. | ========== ====== ====== ====== ============================ ================================= ================== 8 28 95.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AAGTACAGGCGCTTGGAGAAACTTTACAGATT # Right flank : CGGCCTCAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCTTAAATAACGCATATTGATGACCTTATTTCGTAACGTTTTTAAGTAATAAGTTTCTTTTTAAGGGAATGCAAATTGTGTATTGGGTATTATTAATATTTAAAAATCATCATTTTTCCGTTAAAGTACCCTTACAGGGAAATAGTTCGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCAGAAATTACACGCACAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAACGAATCGTGGAAAACGGCGATATTTGGCTGTACCGATCCTACTTCATCGTTTG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //