Array 1 162879-160914 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDKB01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium isolate STM11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162878 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 162817 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 162756 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 162695 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 162634 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 162573 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 162512 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 162450 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 162389 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 162328 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 162267 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162206 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162145 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 162084 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162023 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161962 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161901 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 161840 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 161779 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161718 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161657 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161595 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161492 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161431 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161370 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161309 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 161248 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 161187 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 161126 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161065 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161004 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160943 29 96.6 0 A............................ | A [160916] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180320-179010 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDKB01000004.1 Salmonella enterica subsp. enterica serovar Typhimurium isolate STM11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 180319 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180258 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180197 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180136 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 180075 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 180014 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 179953 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 179892 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 179831 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 179770 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 179709 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 179648 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 179587 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 179525 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 179464 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 179403 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 179342 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 179281 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 179220 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179159 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179098 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179037 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //