Array 1 51-1159 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBS01000012.1 Pseudomonas aeruginosa strain Pa2568 K10_S93_R1__paired__contig_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 51 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 111 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 171 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 231 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 291 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 351 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 411 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 471 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 531 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 592 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 652 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 712 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 772 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 832 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 892 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 952 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 1012 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 1072 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 1132 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GTGTAGGCAGCTAAGAAATGGGTGTCCAACATCGACGGGTCGAACTGCTCG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11120-10015 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRBS01000012.1 Pseudomonas aeruginosa strain Pa2568 K10_S93_R1__paired__contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11119 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 11059 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 10999 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 10939 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 10879 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 10819 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 10759 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 10699 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 10639 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 10578 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 10518 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 10458 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 10398 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 10338 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 10278 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 10218 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 10162 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 10102 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 10042 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 19 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : GTGTCGCCCAGCACCGTTCAGCGCTACTTCATGTTCACTGCCGTATAGGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCGAGGACGTGGCCACCGTGTTCACTGCCGTATAGGCAGCTAAGAAAAGCAATGGAAAGCAGCGATGTGACCCGACCCGGTTCACTGCCGTATAGGCAGCTAAGAAATGCAGGTCATAGGCGTATTCGAAGGACAGGCTGTTCACTGCCGTATAGGCAGCTAAAAAATGTCCCGAAGTTCATAAGCGGGCTTAGGGCGATTTCACTGCCACATAGGTCGTCAAGAAACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //