Array 1 941754-943673 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075141.1 Salmonella enterica strain CFSAN033950 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 941754 29 100.0 32 ............................. TACGCCCCGTTTTTCTCAGCGACCTCACACGA 941815 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 941876 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 941937 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 941998 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 942059 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 942120 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 942181 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 942242 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 942303 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 942364 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 942425 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 942486 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 942547 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 942608 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 942669 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 942730 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 942791 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 942852 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 942913 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 942974 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 943035 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 943096 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 943158 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 943219 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 943280 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 943341 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 943402 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 943463 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 943524 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 943585 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 943646 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 959806-960384 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075141.1 Salmonella enterica strain CFSAN033950 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 959806 29 100.0 32 ............................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 959867 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 959928 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 959989 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 960050 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 960111 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 960172 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 960233 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 960294 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 960355 29 96.6 0 A............................ | A [960381] ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //