Array 1 297037-299964 **** Predicted by CRISPRDetect 2.4 *** >NZ_LOJW01000025.1 Xanthomonas axonopodis pv. melhusii strain LMG9050 contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 297037 31 100.0 34 ............................... CAGTCGGCCGCGATGTTCGCCCAGATCGACCCAA 297102 31 100.0 33 ............................... CCTTGAGGTGCCGGTGGTGCTTGGGCCGCTACA 297166 31 100.0 35 ............................... CGTATCCAGACCGGGCGTAACCGGGTCAAGGCCAA 297232 31 100.0 36 ............................... TGCATCACCAGCAGCGGCGGCGCACCGATCCGGCGA 297299 31 100.0 34 ............................... CACGAAGGCGCTGCAGGTGTTGATGGCTTAGTTG 297364 31 100.0 34 ............................... GAGACGTTCATCACTTGACCCTCCACGAACGCGA 297429 31 100.0 36 ............................... ATCAACAGACTGTGCATGACGTCAAGCAAGCTAGGG 297496 31 100.0 35 ............................... CCGACGTAGAAAGCGCCATCGCTGCTTATGAAAAG 297562 31 100.0 36 ............................... GTCTAGGCAATTGGTGCAAGCTTGACAGCTGAAGCG 297629 31 100.0 36 ............................... CTCGCTTCTGAGCTTTGCTACACCATGAGTGGTAGG 297696 31 100.0 34 ............................... CCCAGGTGAAGAACAGGGTATACACACCGCCTTG 297761 31 100.0 35 ............................... CTGTGAGTCGTCGAAAAACCGCAGGGACTCGCGTG 297827 31 100.0 37 ............................... CAGAATGAACTCTCGGTCATCGGCTAGGTCGTCAAAG 297895 31 100.0 35 ............................... AGTCTCCCGTTTTGGCGCGGGGCCAACGTTTTGAG 297961 31 100.0 37 ............................... CAGTGTGGCGCAGTCCTTGGCTTCCTGCATGCCCAGG 298029 31 100.0 37 ............................... TTGCTTGCGGCCATCGCCGCGGCATCCGAGCAGCCCG 298097 31 100.0 35 ............................... CCTTATCCCAAGCCTTCGCACAGTGGCAAGAACTG 298163 31 100.0 35 ............................... GACTACGGCCCCGAAAGGATGAGGAGCAGGGCATG 298229 31 100.0 36 ............................... CAGCAGAAGTTGTCGTTTGCATCGATGCTGGGCTGG 298296 31 100.0 36 ............................... ACAACTCGCTGGAGCAGGCCCGATAGCTTTTCAGCG 298363 31 100.0 37 ............................... CTGCGGGTCGTTGCTTTCTTCAATAACCGCGATGACG 298431 31 100.0 35 ............................... CCGCCGGGACCAACCTGGGCGGGCCGTGCTACGAG 298497 31 100.0 35 ............................... ATGGACGGGGTGAAGTACCTGCAGGCCGCCGAGCG 298563 31 100.0 35 ............................... CTCATGCCGTCACCGCCGTGGCGTCGCCCAGCTCG 298629 31 100.0 35 ............................... TGGCTATGGGTCGCGAGCTGGGGGCTGTTCCTGCG 298695 31 100.0 36 ............................... ACTCAGATTGTGCACAGGCTTGACGGAACGCTGGGG 298762 31 100.0 33 ............................... ACTATCGATCAGATCGCCGCACGTCTGGGGGTG 298826 31 100.0 34 ............................... ACCGTTACGGCAGCTGGCCGCACAGCCGAAGCCA 298891 31 100.0 35 ............................... ACGTTCTCCGCGCGGGATCTGCTGCCCAGGCACAT 298957 31 100.0 35 ............................... ATCGCCTCAGGCACTGCCGCAGGCGCTCTGATAAG 299023 31 100.0 34 ............................... TCGCGCATGCCGCCGTCAGGGCAGGTCATCATCG 299088 31 100.0 34 ............................... GCTTTGAGCGATGCCGGATCTATGAGTGGGGAGC 299153 31 100.0 34 ............................... TGCAGAGCTGGCGCGCTATAGCGCGGATCAGGAG 299218 31 100.0 34 ............................... ATGCGCACAAGCCTGATCAAGGATCGTGTAGGTC 299283 31 100.0 34 ............................... ATGGCCGAGCGGGCAGGGCTGGCAGCGCTGCGCG 299348 31 100.0 34 ............................... TGTCGAGCGCGCACTGCTGCCGCGATGGCCGGAA 299413 31 100.0 34 ............................... GGCTGGGAGCGTTACAAGTTTGAGCAGCCCGTAG 299478 31 100.0 33 ............................... CGCTTATCGTCAAGGCGACTTTGTGCGCAACTC 299542 31 100.0 33 ............................... GTTTTGTGCGGAGAGCAGCACGAATACACAAAA 299606 31 100.0 33 ............................... AGCTTCAAAGTGTGGATCGGGCCAGACGTCCCT 299670 31 100.0 35 ............................... CCGTACTGGCGTATGTGATGGGCGCGGCCATGGGC 299736 31 100.0 35 ............................... CGCGACCTGGTGGACGAGCTTGGCCGGCTCGGCGC 299802 31 100.0 34 ............................... CTGAGTTCGTCGCCGTCCCGGTCGTCTGACGCGT 299867 31 93.5 36 T...........T.................. CATGCCATATGCGGCGAGATCGCACAGCAGAAGGAA 299934 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 45 31 99.9 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : AAATGACGCGGCTCAAGTCCCATGATGATTCTTGTAAGCTACGACGTCAGCACCAGCTCTCCCGGGGGCGAGAAGCGCCTGCGCAAGGTCGCCAAAGCCTGCCGGGACCGTGGCCAGCGCGTGCAGTTCTCGGTCTTCGAGATCGAAGTCGAGCCTGCCCAATGGACTGAATTACGGCAGCAGCTATGCGACCTGATCGACCCGGCCCTGGACAGCCTACGGTTCTATCACCTTGGCGCGAAATGGGAGACCCGCGTGGAGCACATCGGCGCCAAGCCCAGCCTGAACCTCAAAGGCCCACTGATTTTTTGACGCGAACCCCAAGCGCCCCATAAAAACCGGGCAGGTTCGCAGTCTCCTCAAGCAACTGATTTGCAAAAAAAAAATAAATACATAGCGGATTCACGGGGTCCGCATGACGACTTCTCGACTGCTTTTTTCAGCAAGTCCGCGCAATTGCCCGTGTTTTAGCAACGATGGCAAACACTTATGCTAAGGGG # Right flank : CAATTTAAACTCGCCCCGCCAGCCGGACGCTGACGAGGTGCAGGTTGGACATGCTTGAGGCCTGCGTATGGCAAAGATCAATACGCACGCAGATCAAAAATTGGGCTCCGTCCATCAACGCTTGAGAACCATTATTTGACGATGATGGTCTGAGGCGTGCCTGCAGGCTTGCCGTCCACCATGACCTGCGCGGTGTAGGTGCCGGCCGGCCAGCCATCGGGCTTGCTGAAGCTCAGGTTGGTGGTTTCGGCACCGGTGGTGTTCAACGTCGCGTTCTGTTCGCCAGCCACCTGGCCATCCTGGTAGGTCAGCTTTGCCGACACGGCCACGTTGCTCGCGCTGCCGTCCGTCTTGACCGAGACGATGATGGTGTCTTTGCTGCCGACACTGGTCGCCGGGGTCACCGTCTTGTCGGCTGCGGCCTGGGTGCCGACGGCCACACTGGACACCGTCACTGCGCTACCCGTGGCAGCACCGCCATCGGTGCTGGCCGCACCGGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //