Array 1 2122638-2122066 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046973.1 Microcystis aeruginosa FD4 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================== ================== 2122637 36 100.0 47 .................................... GTGCCGAAAAGAATAGCCACAAAAACCACCACGGTTTCTGTGGGATT 2122554 36 100.0 43 .................................... TTTTTTAACTCAAGTTCTTTGTTTAACTCTTGCTCTTGGTTAA 2122475 36 100.0 38 .................................... AATTAAAGGTGGCTACTAAATTCTTTTTCTGTTCTTTT 2122401 36 100.0 41 .................................... TTTTTTATACTCCGAAGATTCTGTTCAGCAACTGCTGAACT 2122324 36 100.0 40 .................................... ATTAACTTTTCGGGGGTCAGCTTTGCAACTAATTCCAAAC 2122248 36 100.0 38 .................................... CCTTCATTAGCCATTTAACGTGCCAGAATAGTACGAGC 2122174 36 100.0 37 .................................... GGTAAATATAAAAGGTATTACTACCTTCTTAAAGAAC 2122101 36 97.2 0 ...................................A | ========== ====== ====== ====== ==================================== =============================================== ================== 8 36 99.7 41 CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAAC # Left flank : TGATGCTGGTCGTAGTGATTTATGATATTCCTGACGACAAAAGACGGGATAAGCTAGCCACTTTTCTAGAAGGTTACGGTCGCCGAGTGCAAAAGTCGGCCTTTGAATGTTTTCTCTCCCTCGACCAGATGCGGAAACTATACGCTAAAGTAGTAGAAAGGGTCAATCCTCAAGAGGATGATGTACGCTTCTATGGGATTTCCGAAGAAGCAGTCTCTAGGGTGTTGGTAATTGGAGGTTCTCCTCCTCAACCACCCCCAACTGTCTATATCATCTAGCTTGTCCAAGAACTCTTGGCTGAAAATCGATGCACCCTCTCCCCGACTCCCAAAACCCCGATTCTCTGGTTGAGGTGTGTCGATTGCTCTCCCCGTCAGGGTTCTACCCTTTGGTATCGGGACTTTTACCCCCCCCACTACCACCTTTTTACCCTATGGATTGCAGGTGCGTCGATTTGGGTGTCTGTCTTCCCCTCTCGATAAGGCTTTCCAAGGGGTACT # Right flank : CAGAAAAAGGGTTTCTTTTAGAAACCCTTTTTCTAATAAATTGTGTCAAATATATCTTGACAAAAATCGATAAAAATGTTAGAACCTAACGGCAATCTTCGCTTTATTGCATGAGTAGAAAACGGGTTTCTCGGAGAACCCCGTTTTCTGCGATCGCCAGTCAAGGAAAAACCCGATAATTTCCCCTATTCCCTGGGATCAAAATCTGGCAGCGTCCCCAGCTTGCGAATGGTTACTTTAACATCCATAGACAAAAAGTCATCGGCATCACCAAACCAAGATACGGAAAGAGGAATGATTTGACCGGGATGACGAGCGATCGCCACTCGAATTAAATCAAAGCCGGCGGTAAGGGACTTGCGCTTTGATAATGTACCTTTTGTGCGATCGCACTTCGCTCCTGCATTGTGGACAAAATCCGTTACTGTAGGGGCGCAAAGCTTGCGCCCTCCGATCGATCAGGTTTGCTGATCACCCTAAGTAGGGCGAGAGCCTTCGAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTACCTATTAGGTCAAATAGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.70,-4.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 3439878-3443542 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046973.1 Microcystis aeruginosa FD4 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 3439878 37 100.0 35 ..................................... ACGATAGAATCACGAAATGATATGGGATATTCCCT 3439950 37 100.0 35 ..................................... AAACCAAAGCTATTTCCCTGCCTGATTCTAACGGG 3440022 37 100.0 33 ..................................... TTCTCGTGCTGTAAATGCCGAAATGATATTCGC 3440092 37 100.0 34 ..................................... TTTGAGTTTCGAGTGATACCTGCGCTACTCGCTA 3440163 37 100.0 35 ..................................... ACTATATAGATGTTTCTATCTATGATGTTGACAAT 3440235 37 100.0 33 ..................................... CATCGTGGACATGATAGCCCCATCTTTATTCAC 3440305 37 100.0 36 ..................................... AAATCCGACAATAAAAGCGAATGCGTCCCTCGTATT 3440378 37 100.0 37 ..................................... AAGACTAGGGTCTATGCCAATCGGGTCTTTAAATCCG 3440452 37 100.0 34 ..................................... ACACCGGGACGCGCTGACTATGAGCAAAGCCCTA 3440523 37 100.0 34 ..................................... ATTTCAGTGGTAATCAGAAAATCGGCTGTACTCT 3440594 37 100.0 34 ..................................... AAGGTGTACGCCATCAGCCGAGTATTCTTCGGGG 3440665 37 100.0 35 ..................................... CCAATTCCACGTTTTCCCGTTGTTTGTCGAGTGTT 3440737 37 100.0 34 ..................................... AAATAGCCCGGTTAGTTCGTCGGCCAGCCATACC 3440808 37 100.0 36 ..................................... TAAATATGAAGCTGGAACTGTTTTTGATCGCACATG 3440881 37 100.0 35 ..................................... TACTAGAGGGGATTAAAAAGAACGATTGGAATAAT 3440953 37 100.0 37 ..................................... TAAGATGTCTGCTTTGTACCCATCCGAGGGTGATCTT 3441027 37 100.0 37 ..................................... ACCTGCGGCCACGGCGGCCAGTAGGGGACAGATATTT 3441101 37 100.0 34 ..................................... TAGCGATACCCAATCTAGTAGGCTTGAAAAAATG 3441172 37 100.0 37 ..................................... CTGCGCGAGTCGAGGATTGAGCCGGCGATCGTTCCTA 3441246 37 100.0 34 ..................................... CTAACGGACGAAGCGTTAGAAGGCGCAATTTCTT 3441317 37 100.0 41 ..................................... TTTTTGTCCGATTAGTAGCCCGATGCGGCAAGCTGTTGATC 3441395 37 100.0 41 ..................................... ATTTACTGGGGCGGCCGACTCGATCGCCGCTCACGATTCAG 3441473 37 100.0 33 ..................................... ATAGGTATTTCTTGATAACTTGAATTACCATCC 3441543 37 100.0 34 ..................................... AAAGGAGGGTGATGGCTATGGCTTGTTAGTGCTT 3441614 37 100.0 34 ..................................... TGGCCATCGATAAGCATTAGGCTGGAATCTATTG 3441685 37 100.0 37 ..................................... AGCGACAATCCCTAAACTGTGTGCTAATCTGATTAGA 3441759 37 100.0 34 ..................................... AACATAAACTTAAACAGGTTAACCCTTGACAGAC 3441830 37 100.0 37 ..................................... AACCAAAATTTAACCAAGTTAACCCTTGACAAACCAT 3441904 37 100.0 36 ..................................... AATTGGTACTCTTTTACAATGCCGGTACAAGCTAAT 3441977 37 100.0 36 ..................................... TTTCCTAATAATTTCACCCAACAGGAGTAACACATG 3442050 37 100.0 34 ..................................... AGTATCTCAACTCTGGACTGACACTAGGGGAAAC 3442121 37 100.0 36 ..................................... AGGGTAATTTCTTTTTTGGGCTTTAACTGCTCAATA 3442194 37 100.0 35 ..................................... TTCGCACTTAAGAAAGGAACCCAGGATTTAATTGT 3442266 37 100.0 35 ..................................... AATTATCTCAACAGGGAGAAACTTGCTTTTTACTT 3442338 37 100.0 37 ..................................... CACTGTATCGTATTCGGAGATACTCATCTGCTCAAAA 3442412 37 100.0 37 ..................................... CAGTCTGGTATATTTTCTTATCTTTTCTTTTTCCCTA 3442486 37 100.0 34 ..................................... AGTAATATTGTCAAGCATTATTCCAAAAAAAGTT 3442557 37 100.0 36 ..................................... ATTTGCTTCATTTATCCTAGCCCGCATTTTTCCCAA 3442630 37 100.0 37 ..................................... AAAAAATCTTTGATAACATTAAAATCTTGCTTGCCAG 3442704 37 100.0 35 ..................................... GCTTACAATTGACTATAGATTTTATTAAAACCAAA 3442776 37 100.0 38 ..................................... TGCTGAATGAATTTATAGATTGTGATGCCTCTAGACTG 3442851 37 100.0 34 ..................................... GATTTTACCGCCTCAAGACAACGAATCTCTAACT 3442922 37 100.0 35 ..................................... TAAAATTTTATTATACTCTTTGATTTTCGAGTATA 3442994 37 100.0 41 ..................................... TATTCCGCTATTTCTATAGATTTGCCCGACGGGAATATCTA 3443072 37 100.0 36 ..................................... GGTTTAGATATGGGTGCTGTGGCAATATTTACCGAT 3443145 37 100.0 34 ..................................... TTGTTCATACTATGCACTGGCACGATGGAAAAAG 3443216 37 100.0 36 ..................................... AGCAATAAGAACACAAAAATAATATTGGAGGATAAG 3443289 37 94.6 37 .................GT.................. TCGACGGTGAACCCACCAGTAGGCGGAGTTCCTACAG 3443363 37 97.3 35 .......................C............. GGATTATCGTTTTAGTGGTTTCTCGACACTCTGAC 3443435 37 97.3 34 .......................C............. TGGCCTCTTCTCGCACGAAAGCTAATCCTTTGGC 3443506 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 51 37 99.8 36 GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Left flank : TTTGTTGTCAGTTACGACATTTCCGATGATAAGCGACGAACCAAAATTCACAATACGTTAAAGTCCTACGGCCAACGGGTGCAGTATAGTGTTTTTGAGTGCGATCTAACCGATACCCAGTACGCTAAGCTGCGCGGGCGCTTGAGTAAGTTGATCAAACCCGATACCGATAGCATCCGCTTTTATTTTCTCTGCGCCTGTTGTCGGGGCAAAGTGGAACGCATCGGTGGTGAGTTACCCCGGGATAATACAATTTTTTTTGTTTAGCTCGGTTGCGCTTCCGGGTAGCTGTAAAAATTCTTAACTATTATCTGGTGGCTGAAAAGCTTATGGAATATAGATTCGAGATGATTTTCCTTTCCAATGCGGGGCGCACCTTATCCCGTAAGGTTTTGCGGGGTCTTGAAGAACTGGGTCACTTGCTGTACAATGGGTTTATTGCGGGTGCGGCGCAACGGAACCTTGAAAATCCCATAGCGTACGGCTTTTACCACTGGGCG # Right flank : CGTCCCAAACATCAGAACAAGTGAACTGCTGATTAGTTCGGCTCTTCGTTACTTGGTATGATTCGATCAGGGGGCATAAATCGACTAAATCCTTATCTGGCAAGAGACTTAATTGATTAGCTCGTTCTAGATCGAAAACAATTGACAAATATTGCAGCAATGTCTTTCTCTATAAGGGTTTCATCTCTTATAATCCCGTCCCTTGCATAACAAAAACCGAAGAACCAAAAATATCAAGAAAAAGAGTCAGGAACATCCGAGAGAAAAAGAACCTTTATTGAAGAAAGAACAATTACAAAAATTAAAATTGAATAAATTCAGGGAAATTTACGGTAATCTTGCCAGTTAAATCAATTCCCTGCTATCTCCATCCCAAATTACTGCTAGTACAAAAAGTCGATCAACTTTTAAATTATCGATTGAGAATAGAAATAGTTCGATGATTTTGAGGAGTTTTTTCCTGAATTATAGGACGTAGTTGTTGCACCAGTTCCTTAGAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAATTAATCTTAAACCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //