Array 1 299-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_WABS01000196.1 Pectobacterium parmentieri strain NY1588A NODE_203_length_323_cov_6.45522, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 298 29 100.0 32 ............................. GCGTCTTGTGCAGCATTACGATAAAAGTTACC 237 29 100.0 32 ............................. CCAGCTCTTTCTTTCTTGACAGCTTCATAAAA 176 29 100.0 32 ............................. GCCGGGCTGGAGATTATCGGTAATGCGGAACA 115 29 100.0 32 ............................. GTCTCGACTACTAATAGGATCAATCATGCGGA 54 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATGTGGTCGATGAGGCGCTTAACA # Right flank : GGGCTGCGATGTGGTCGATGAGGCGC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [13.3-21.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27-238 **** Predicted by CRISPRDetect 2.4 *** >NZ_WABS01000218.1 Pectobacterium parmentieri strain NY1588A NODE_227_length_264_cov_5.52153, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27 29 100.0 32 ............................. CTGTTTGGGTTGATGAGAAGGAGAGGACTTTG 88 29 100.0 32 ............................. GATATGCAAAACGTCATTATCGGCGGCATTCT 149 29 100.0 32 ............................. GTTGCCGAAATCTTCAATGGCATGGATTTAGG 210 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATACTCAATCGTGGTCGTGCCGAAACG # Right flank : AGAAAAATACTCAATCGTGGTCGTGC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [21.7-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 32577-33645 **** Predicted by CRISPRDetect 2.4 *** >NZ_WABS01000030.1 Pectobacterium parmentieri strain NY1588A NODE_30_length_64909_cov_6.95729, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 32577 29 96.6 32 ..C.......................... TCCAATTTAAATATGCTTTTTTTACCAATTCC 32638 29 96.6 33 ..C.......................... GACGAGGAATCTGATAACGCATTCCGTGTTCGC 32700 29 100.0 32 ............................. GTCGTTCATCAGGTCATGCTCTGACAGCTTCG 32761 29 100.0 32 ............................. CAGACCCTCTTTGGTATACTTCAATTTTATAA 32822 29 100.0 32 ............................. CAACGACATCGAAATCAGCGCTAAATATTTCT 32883 29 100.0 32 ............................. GATGCGATGAAACACACGTATCTGGGCTATGC 32944 29 100.0 33 ............................. TGGAAGGCTGGGCGCGTGAAATCGGGTGCAATC 33006 29 96.6 32 ............................A TCTGTCATTGGCTGTCGGGGAGGTTCACTGCC 33067 29 100.0 32 ............................. CCCCAGCGCATAAACGACGCTATACCACAACC 33128 29 100.0 32 ............................. TCAGCCCCCCAAACAAACACAGCCGCTATCCA 33189 29 100.0 32 ............................. TCTGCGTTAACAGGCCGCTTGTTTGGGCGTTT 33250 29 100.0 32 ............................. ATAAATCATATTCAGAGTTGGAATTCTTGAAT 33311 29 100.0 32 ............................. CTGTGGCTGAGCTATTTCGTGCGCGTCGTTGA 33372 29 100.0 32 ............................. AGAAAAATACTCAATCGTGGTCGTGCCGAAAC 33433 29 100.0 32 ............................. TGCTCGCAACGTTTGCGTATCAGGACTACGCA 33494 29 100.0 33 ............................. TGCTAATTTGTAACCTTCCGGTATTACCGGAGA 33556 29 100.0 32 ............................. TTCCAACCCTTTCAGCAAGCTCTACCTGAGTA 33617 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAAGAGGTGTTGTCTGCGGGAGGGATTACGCCACCGCTGCCACCGGACGATGCTCAGCCGCCTGCGATCCCTGAACCGAAACCGTTTGGTGACAGCGGCCACCGAGGACAGGGTTAAATGAGTATGCTCGTGGTCGTAACGGAAAATGTTCCACCGCGTTTACGTGGCAGGCTGGCGGTGTGGTTGCTGGAGGTTCGCGCGGGTGTTTATGTGGGTGACACCTCGCAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTAGTGATGGCGTGGTCGACGAATACGGAGTCTGGTTTTGAGTTCCAAACCTGGGGTGAAAACCGCCGAATGCCGGTAGATCTGGATGGCCTGCGGTTAGTCTCTTTCTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGAATTTTTTCTGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : CTAATCCGTGGAAGCGGCTACAGGATTAGCTGTTCTGGTTCGCAGTGGTACAGCTTAGCCAGCTTTTCTCGGGTGCGCTTCTGCGTCCTTGAATCTGGGGATTCAAGCTGAGAGACGGCCGCTTGGGTCATGCCAAGCGCGGTTGCAACTTCTTGCTGAGAGAAGCCTCTGAAAATTCTCCAGGCTGCCTGTAAGCTGACGTCTTGATCAATGTGGATGCTAACCACTTCATGAGGAATAGAGACGTCATCCTCTGCGCTATGATCGTAGGGAATACTCTCATAGAGGGCGGGGTCGTCAGCATTTTCAATAAGTTTCTGATATAACTCGTACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTTCGATGGGTGAAAATCAGTTGCGGTGTAAAGAAGGACGCATTTTCCTCCTCAATATGTCGTCGTTGTCCTGCGTTTGATTTCAAGTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 35515-36031 **** Predicted by CRISPRDetect 2.4 *** >NZ_WABS01000030.1 Pectobacterium parmentieri strain NY1588A NODE_30_length_64909_cov_6.95729, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 35515 29 100.0 32 ............................. TTTTTCTGTACACGTCTAGTGGGTTTAAATCA 35576 29 100.0 32 ............................. CAAAAAACGAGTATCGCAATGGTGCGATTCGT 35637 29 100.0 32 ............................. GTAAGCAGCCGGGTCTATCGGCTGGCTCTCAC 35698 29 100.0 32 ............................. GTCTGGCGGCCACGTATTTCCCGCGGAACAGC 35759 29 100.0 32 ............................. GCTGCACGCCAGCCTTCCTACTGGATTCAGTT 35820 29 100.0 32 ............................. ATTAGGGCGGATGCGGCAGTAACGCCAACCCA 35881 29 100.0 32 ............................. GGCTGCGATGTGGTCGATGAGGCGCTTAACAT 35942 29 100.0 32 ............................. GTGAAAACCTCCGCTACTACCTTTGTTCTCTA 36003 29 96.6 0 ...........................G. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGTAGCTTTCAACGAGCGTATTAAAGCGCTCCCTGCTGGTATCGCTTTGCTGCGCATACCTATGGATCAGCATGGGCTAACGCAAAGTGACTTTGAAGCTGAGATCGGTAAAAAATCTCTGGTTTCCCGCATTCTAAATGGTGAGCGTACACTAACGCTTGATCACATGAGAGCACTTGCTAAACGATTTGATATTCCCGTGAGTGCTTTTATTGATTAGTACGATTTTTGCCAAGTACAGCATGATGCGTAATGTAATAAAGACTGCCGTGCTGGACTGTTATCTGAATAATCCCTGCGTTAGCAGGGATTACTTTATGGCTGAGACGCATTGTAAGAAATTATTGAAAGGAATGCCGGTAGATCTGGACGGCCTGCTGTTAGCCTCTTTTTCATCTATTGAAAATCAATAAGTTGGCGATATTTAACAACATGGAAAAATCGGTGGGATTTTCTCTACTGAAAAAAGTGTTATAAAACAAACCTCTACTTTTAGA # Right flank : GTTATACCCCTTGTTGCATGTTGGTCTAAATATTCCCCGCATGCGGACAAATCCCGCTTCTAGCTGGCGCGATGGCAAATTGCGTGTCAGTATTACAGAACGCTGTTTTTGTGCTCACCGTACTGGTGCGGTACGATATCCATAATTTTTTGTCTTCCATACGTTACCCGTAAGGAGGTGGTATGAAAGTTGAAGCCGCAGAGTCCTCCGTTTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCCACAGAGCATGCGGAGAAAGTGGCGCTGTCCGAACAGCTTCAGCCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACACGCTATGATTTTACCCGCATCAGCCCTGCCGAACTGTATGAAACGGTAGAAGGTCTTGTCAGCAGCGGACAACTGGGACGCGAAGAGGGCTCCGCACTGCTGGGTTTTATTTCGTCGCCGCGAGAGAATATCGGCAGTGTGCCGCCTTCTAATGTGTTCCAGCCAATT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 72820-70991 **** Predicted by CRISPRDetect 2.4 *** >NZ_WABS01000022.1 Pectobacterium parmentieri strain NY1588A NODE_22_length_84642_cov_6.58036, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 72819 28 100.0 32 ............................ CGATACACGAAAACCCAACGGTGATGATGGCC 72759 28 100.0 32 ............................ CACTTAACGCAGTCGCTATCGCAGCAACCGGC 72699 28 100.0 32 ............................ GTTATGCATACTGACTGAGCAGGCGAGGATTG 72639 28 100.0 32 ............................ TAATGCCTGTTGATAATATTGATCGTATATTT 72579 28 100.0 33 ............................ GCCCACGTCACCATTGTCCTGCTGCTGTTGCAA 72518 28 100.0 32 ............................ AGATTCAGCGTGTACTGATTCTCAAACGACAG 72458 28 100.0 32 ............................ AGCTCCGGTTAAATTGGACTGTCTCCTTTTCT 72398 28 100.0 32 ............................ CTGATGGAGTCTGATAGTGATTTTCGCCTGCG 72338 28 100.0 32 ............................ GCCACCGCGCCACTCGTCACCGTGAGGGCGTC 72278 28 100.0 32 ............................ GGTCAGGAACCGCGTGTCATGAATGAACGTAG 72218 28 100.0 32 ............................ TCTTTTTCGTCGCTGAACGGCCGGTGCAGTCT 72158 28 100.0 32 ............................ AACCCGGCTGAAACATGCCTTGCGCATTCTTG 72098 28 100.0 32 ............................ TGCTCGTTCCATTTCACCCATGTGAACAGGAA 72038 28 100.0 32 ............................ ATTTCCCAATGCCCGCCGAAGTCCGATTGCCG 71978 28 100.0 32 ............................ TTCACGCATTCATCCTGATGCTGCTTACTGGC 71918 28 100.0 32 ............................ ATCGCCTGACTGTAGTGCGTTTTCTCACTCGC 71858 28 100.0 32 ............................ GCTATGGCATCAGCGGCATTTCAGCAGGCCAA 71798 28 100.0 32 ............................ ATCCTGCGGCGGCTTCACTTCGCCTGGGAACG 71738 28 96.4 32 .............C.............. TGCCTGCCGACAGCTACGCTGACGAGCCGCAA 71678 28 96.4 32 .............C.............. TCCTGCTGGTGGACGAACGCGCCCGGAACCAG 71618 28 96.4 32 .............C.............. AGTTACTCGATACAGTTTCTCCGACCCAATGG 71558 28 100.0 32 ............................ TGATTATCAATTTGCCGAGCGGAACGGCGCAG 71498 28 100.0 32 ............................ GCAATGACAGCAGTTGTCGCGCAGCCGGTGCG 71438 28 100.0 32 ............................ AATCTCAAACGGCGTCAGCCCGTTGTACAACG 71378 28 100.0 32 ............................ AGCAGATACGGACTTACGCAACTGGTCGATAA 71318 28 100.0 32 ............................ GCCAGGCGAGGGAGCTGCACCGGACAGCGGGT 71258 28 96.4 32 .............C.............. ACCTGATAGAAGTTCATGCTTGTGGAAAGAAT 71198 28 96.4 32 .............C.............. TCTAGCCAGTTATGAATTTCAACCGACTTTGA 71138 28 96.4 32 .............C.............. ACTGTTATTTCATACGGCACATCAGGTGGCAG 71078 28 96.4 32 .............C.............. AGATCACAGTGAACAGGAAAACGATATTCAGC 71018 28 75.0 0 ............GC......T.C..TGT | ========== ====== ====== ====== ============================ ================================= ================== 31 28 98.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTTCCCAACATCACAACGCTGGTATTGGCGATGGGAATATTCCAGTACAGCGACTGACTTCCCTCTTCCGTGACATATTCGACACGGCCACCGTTGACGAGAATGCGACAATGCTGAAGATAATAAACATTGGCGCGTTTGGAATGCAGAATTGTTTTTAAGTCCGAAGGGCTAAAAGCGTTATCCATAATGTATTTTCTGCCGCGATCGATAATAGGTATTGATGTCAGCGAAATTAATCGCAGACTAACTATTTAATAAATAAAATATAATCTTCAGAAAACTAACGAAAATCAGCCTATCACAGATATCTTGGGAAAATGATGGCTACGAAAAATATTACCCAGATGCAGACCCTTTTTATTTGGTCTATTTCACAGGATTAAAAATCAATGAGTTACAGTTAGGCTGAAAAAAAGGGTTTTTGCGGCAAAAACGGTGATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGTTACT # Right flank : TTATCGAGATAAGTCGCTGGTACGATTCGCTTCAAGGGAGCTATTCCCCATTCAGCGTAACGACCAGCGAGCGGCTACCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCATCCGTCGGTGATGGGGAGCGTGAGGCTGTTTCCCAGCAGGCTGCCTTTCAGGTGCGCGGGCATGTCGTCACTGCCTTCATAAATATGGCGGTAGTACGGTTCATCCTCCGGCACTAACCGATTAAAGAAATTCTCGAAATCCTGCCTCACCGTGGGGTCCGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACATGCATCAGTCCGGCTTTTATCTGACGCAGCGCAGTGACCTGCGCCAGTATTTCATCCGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGCCCACATGATTTGGCCTCTCGCTATCAGGCTTCGCGTGCCAGAATCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6203-5334 **** Predicted by CRISPRDetect 2.4 *** >NZ_WABS01000085.1 Pectobacterium parmentieri strain NY1588A NODE_85_length_7121_cov_7.87277, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6202 28 100.0 32 ............................ AGCCTTATTCAGTTTCTCTGTCAGTTCTGCAA 6142 28 100.0 32 ............................ GTCGGCGTAGATGTTGATGACGGGTGATGCGG 6082 28 100.0 32 ............................ AGCAATCCGAGCAATTGGAGGCAAACCATCAG 6022 28 100.0 32 ............................ TGCCAGTTCAGATGTTGGCATCGCACCAATTG 5962 28 100.0 32 ............................ GTTCTCCGCTGGCTGCGAGCGCTCAACGTACC 5902 28 100.0 32 ............................ GCTCGGATCGTAGCCTATCCATACAGGGCGAT 5842 28 100.0 32 ............................ AACTACCGAGGCTCTAGGCGACTAAGCTAATT 5782 28 100.0 32 ............................ GTTGCGCTCGGCCGCTTGCTTCATCATCTGCC 5722 28 100.0 32 ............................ TGAATATTCTCATTGCGCTCAGGCTTTGGCGT 5662 28 100.0 32 ............................ TGCGAGGCACTGGCATCACCAGTCTGCCGGAT 5602 28 96.4 32 .................T.......... TGCTCACGGCTTAGTTCCTGAGTGGAGCCTGC 5542 28 96.4 32 .................T.......... AATGGAATATTGCCATTTTTTTGATCAGGAAC 5482 28 100.0 32 ............................ GCAATGCGTGGGGCGGCATGGTATTGAAAGAA 5422 28 100.0 32 ............................ GGGCGCGCTGTCATGCTGCGCATCGAGCCAGC 5362 28 85.7 0 A...........GC..........A... | G [5336] ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CGCCTGGCGAACTGCATGTTTCCATATTGGTGGGCGTAGCGATGACCACTATCGGCATCGTGAAATATCGGCACGCCCAGCACAATTCGAGACCTCATAGCCTAGTGCGGAGCAAAACCGTTACCCAAAAAACGCTCTCCACAAACACAATCACCGCCAAAACAATCGCCGCATTCGTACTGATCGCGCTTTATCTGGTACTCCCACTGCATCTCTATCTGCGTGAACCTTTACCCTACTGCGCCTTTAGCCCCAGCGGGCAGCAGCTAAGTATCTGTCTGGGAGAGGATGACGAACGGATCATTGTGGAGTGATGCAGATTGGAACAGGCCGAGACAAAGAATAAAATCTACAACGCGCTTCCTCCAAGACCCTTTTTTAACGGCTAGTCGTAATTTACTGATTTTTAATCACCTACAGCCTCGATTGTAAAAAAGGGTTTTTCCGAGAAAACAGGGTATTCGCTTTAATAATCTGGTAATTAGCATAAAACTCTTACG # Right flank : CAAAACGTTCCGGAAATCAGCGATAAAAAACTCATAGGCAACGCGGCTTAAAAAGCTGGTAGTCTGTTTGATTGACTATCTGACACTGTTTAGGGAACGCGATGTACAACATTGATGATTTCGATCTGAAAATTCTGACGCTGCTGCAAACCAATGGCCGCCTGACCAATCAGGAACTGAGTGAGTTGGTCGGGCTTTCCGCCTCACAGTGCTCCCGCCGCCGCATCGCGCTGGAACAGGCACAACTGATCCTCGGCTATCATGCCCGACTGTCACCGAATGCCGTTGGTCTGGAATGTCTGGGGTTAATTGAGGTGCGGCTGATCAACCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTAGGGGAAGTGGATGCGATTATCGATGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTCGCGGATCTGCCAGGGCTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGTGTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //