Array 1 200332-200816 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIP010000003.1 Listeria seeligeri strain FSL W9-0993 NODE_3_length_394011_cov_84.354364, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 200332 29 100.0 36 ............................. TTAGAGGAGAGTTACATAACTGGTAAAGAAATTGGA 200397 29 100.0 36 ............................. TTTTTTATTGGTATTTTGCTAGTTTCGCCGCAAAAG 200462 29 100.0 36 ............................. AAATAATTCGCGCTAATGGATAGGTTTTTTGCAATC 200527 29 100.0 36 ............................. TTTTTTCTTATCTTCCGTCCATTTTTTGCCCGTCAA 200592 29 100.0 36 ............................. CCGGGATTGTTTCTAGAAATAACCGCATTAGAAGTT 200657 29 100.0 36 ............................. TGACACAGAGGGGGAATTTGAAGGACATGATATTAC 200722 29 100.0 37 ............................. GATGCTGCAGCGTATATAATTTAATTGAGCTAATTTT 200788 29 93.1 0 ..........T.C................ | ========== ====== ====== ====== ============================= ===================================== ================== 8 29 99.1 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGTGCTGTCGAAGTCATTGCCTGCGCAACCCATTCGGTTATGGCTGGAAATGCTACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCTGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAATTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAATTGGGTCTCTGCTTTTTTGTACGTTAACTTCTGTCGACCGTTAGTAGTGCAGAAAACAAGAGGGATTGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTTAGTTATGAAATTAAAGTTCGGTGCTTTGATTTTAAGAGGTTTTTTGGAGATCGACAAAAATAGGCGCTTGAGGTAAGATGGGAATAAGAGGAAAAGTGAACGA # Right flank : TGTCTCCCAGTCCACTTACTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAATCATCCAAAAAACACCAAAGCGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTTCTATTTTTACTATTCCTACTAGCTAGTTGCTCCGCGCCCAATGAAAAATTAACAAAAAACACCAAGATTTTTAAAGAAGGCGTTATTAATGCGGATTATCAGATTCCACAAAACCTAGCAGAGCTTGAATCTAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAAATGGCAAAAATAACAGCACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCGAATCAGGTGAGAAAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGGGAGTACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATCTCTTGTTTTTAAGCGGAGGACATGACGGGGATAGAGTAAGTTCTAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 207055-208510 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIP010000003.1 Listeria seeligeri strain FSL W9-0993 NODE_3_length_394011_cov_84.354364, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 207055 29 100.0 36 ............................. GCGAACCTCACATTCTCAAATGTTTCATTTGTTGTT 207120 29 100.0 36 ............................. ACGGTAATAATCACTATCATTCTTCTTGTATTTCTC 207185 29 100.0 38 ............................. AATTAATTCGTCCCCGCGATCATCAACGTGACCGCTTG 207252 29 100.0 38 ............................. AAGAACGTCCCTGCATCATCTTCACTTTGAAGAGTGTA 207319 29 100.0 36 ............................. TGACCATTTACAAGCGCATCCATTTTGGGTGATACT 207384 29 100.0 34 ............................. TTATTGGATAAATTTGTAAAGGATTTAATTCTCC 207447 29 100.0 36 ............................. AAATGGTGCTTTTGAGGCAAAATATCGACGTAAACC 207512 29 100.0 35 ............................. ATAAAGGAAGTTCAAGTACTTCAAAAAGTAGTGGA 207576 29 100.0 35 ............................. TTTTTTCATTAAGTATCTCACAATAAACAAATGTA 207640 29 100.0 37 ............................. AACGATTTTATGAGCAGATCGAGAATTTTTTTCTCTG 207706 29 100.0 38 ............................. TTTGTTCGATTTCATTAATTTTGTAGCTAGTTACCTCT 207773 29 100.0 35 ............................. TTTGACTTATTTGAACTTCCGTTACTACTGCTATT 207837 29 100.0 37 ............................. TGCGTAAGTATTTCCTTCTGTATAGCCACCAAGCTCC 207903 29 100.0 35 ............................. GAAATAAACGAGAGTAATCTACCGTTCTAAGCAAT 207967 29 100.0 37 ............................. TCCTACAAGTCGCACGCCATTTAAGTAAACCTGCAGG 208033 29 100.0 34 ............................. CTAATCTGAGAATACTAAAACGAGCTTGTTCCGC 208096 29 100.0 35 ............................. ATTACATTTTTTTCCGCAGCCGCATCTGCTACTGC 208160 29 100.0 36 ............................. TCGTTTGAATACAAACATAGGTCTACAGCAACACCA 208225 29 96.6 36 .........G................... CAAGTATAGCGATTTTACTTGATGACCCGGCTTGCT 208290 29 100.0 36 ............................. AATGTAATGACTTTGAGGATTTCATAAGGAAAGAGG 208355 29 100.0 34 ............................. AAGGTATTTATAGTCCCCCTCCACCGCCGTCCCA 208418 29 100.0 34 ............................. AATATTTTATTCGCTTGAATAGAGTAGGGTTCTC 208481 29 86.2 0 ........C....C..A...........G | T [208507] ========== ====== ====== ====== ============================= ====================================== ================== 23 29 99.3 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : TAAAAAGTCACCGTCCATCTTTTTTCTCTTTTGTCTCTGCTTTGCTCGTCGTTGAATCATTCCCACAGCCCGCAATCAGTAGTAAAGTACAAAACACCACCATCAACTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATATAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATGATTTTAGCACAGATGGTAAGCGTTTACAAGTTTGCGTATTTTCTGTCGATGTGTGGTAGCGTGGAAAGTACTGGAGACCGACAGATTTGCGGGATGCGTTGGGAGAGAATGAGAGTGGGGGGATTTTGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : GCCTTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGAATTATAAATTCATCCAGCAACAAAAACATAGCTAGTAGCACTATCATAAATTTTCCAGTCAAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATAAATTATATAGCAAATGTTAAACAAAACACTAGTATTTTCAGTGTTTTTTTTTCGCTAGCATTCACTCTTTTTTTATGTTAAATTAAACACAAACAACAGAGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACTGGAATTGAGAAATCTAGTCCCGAAAGATATGAAGATTTATTCGGGGGTAATAAGCGGAAAAATTACACCTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 217109-218886 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIP010000003.1 Listeria seeligeri strain FSL W9-0993 NODE_3_length_394011_cov_84.354364, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 217109 29 100.0 35 ............................. GTAGAATATGCCTCTGTGTATGCAGCAAAAGATAC 217173 29 100.0 37 ............................. ATTATAGGTCGGTTGGTGGATTGATTTAAGGTTAATG 217239 29 100.0 35 ............................. TGTGTTACAATTCAACTCCTTTTATATTTCAGTTG 217303 29 100.0 38 ............................. CATGTATTTTAACGTGCTTGGACTCATTAAATACGTAA 217370 29 100.0 36 ............................. TTTAGCATGTCTTTTAGTTTTTCTCTCTGTGTCTTC 217435 29 100.0 36 ............................. AAGTTTGGTGGCGTAATTTTATAAGTTGTTGTTAGT 217500 29 100.0 34 ............................. AGAAGTTAGAGGCTGTTTGAGCTAGTTGCTCCAT 217563 29 100.0 37 ............................. AAATCTATTTGGCGATTCTGTTTGGAATTTACGTCTA 217629 29 100.0 34 ............................. ACAGCCGCAAAGTCCTTAACGCTTGCATAGTCAA 217692 29 100.0 34 ............................. TACACAAGAGTAGTAATTACTGTAGATGGAGTGA 217755 29 100.0 37 ............................. ACACTTATAAAATTCTACGTAATCGACAATATCACTC 217821 29 100.0 37 ............................. GTATCAGCCGGAATGGCAAGGCTCTGTGGGGTATATT 217887 29 100.0 37 ............................. AAAGGAGATAATACCCTGTACGTACTAGGTCAGCAAC 217953 29 100.0 35 ............................. GTGGAAGATTTGGAGGGTGAATAAATGACTTTGAG 218017 29 100.0 39 ............................. TTGGCATTACTATCTGTTTTGATAATCAATGTTCTTCAC 218085 29 100.0 37 ............................. AGAAGTATGGAAAATTAGACCAGAAAACTTGGCAAGA 218151 29 100.0 35 ............................. CTTAAAACAGGTTCGTTCGAGATTGACTTCTCTTC 218215 29 100.0 36 ............................. AAGTGATAAAAGAAGATGACCACACATGTGATGCAT 218280 29 96.6 35 .......................A..... TTATTATCCCAACAACTAAAGAAAACTTGAACTAT 218344 29 100.0 35 ............................. GAGATTAGCAATTTATTTAAGAGTATCACGTTTCC 218408 29 100.0 35 ............................. ATTTCTAAGACTGCTACTCTTTTTCTGTCTATAGA 218472 29 100.0 34 ............................. CCGTAACGGGGACGTTTGTAGACGTTGACGACTT 218535 29 100.0 34 ............................. TCCAATCAATCGAAAACTGTAGACTGTCGATAAT 218598 29 100.0 35 ............................. TGGGTACGGAAAAAGAAGAAAAGTTCGGGTAAGAA 218662 29 100.0 36 ............................. AACACCGGAGTTTGAGCGGTTGAATCATCTGTTAAC 218727 29 100.0 36 ............................. TCAGGAGTGGTAATGTCTTCTGTTGCTACCACATCA 218792 29 79.3 37 A.A....C....C........TC...... GTGGTCACAGCCTTCTTATTGCCAGCAGGTGAGCCCC 218858 29 75.9 0 .......C.......CA.....CA...CC | ========== ====== ====== ====== ============================= ======================================= ================== 28 29 98.3 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAGATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCTGCTCTTTTAGCGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTTGACCTCCAATAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTGGGGGAGAATGGTTTTTGGTGGATTTTCTTGTTTGAGGCGAGAAAATAAAATAGGTTTTACCTGCTTTTTACGGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGAATTTGGCGG # Right flank : CCCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTCATTCAAAAAACCACCCCCCAACCCTCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGGGTGAAGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGAAGAAATAGAAAACGGAAAAATGGGAATATTTAATTATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGAGGCGTTGGATTTAAAACAGTGGGGTACACAGATGTGACTTCATATGAGACAGCGGTGCAACAGTC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 28996-28240 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIP010000014.1 Listeria seeligeri strain FSL W9-0993 NODE_14_length_31437_cov_77.350415, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 28995 30 93.3 39 TT............................ CCATCTAAATACAATTGTTCGTTCAACTTCGGTAAACCT 28926 30 100.0 36 .............................. CTTCTTAGATGCAAGCGGTACAACCTCGGTAAACCT 28860 30 96.7 36 .............C................ CCATCTAAATACAATTCGTTCATCTCCGTTAAACCA 28794 30 90.0 36 ..A..A.......C................ TCCTCTAAATACAAGTTTTTCAACTTGGTTAAACCA 28728 30 93.3 36 .............C........C....... TTCTTTAAATCCAAGTACATCGAACTCGTTAAACCA 28662 30 96.7 36 .............C................ TCCCCTAAATACAAGTTGAGCAGCCTCGGTAAACCT 28596 30 100.0 36 .............................. TTAGCTAAATCCAAGTACGTCGAACTCGTTAAACCA 28530 30 100.0 36 .............................. CTTCTTAGATGCAAGCTGACCAACCTCGGTAAACCT 28464 30 100.0 32 .............................. TCCCCTAAATACAAGCTGCTCAACCACGGTAA 28402 30 80.0 36 A.C...A..GG..C................ TCCTCTAAATACAAGCTTTTCAACTTGGTTAAACCA A [28394] 28335 30 96.7 36 .............C................ CCATTTAACTCCAAGTTGGTCAAATTTGTTAAACCA 28269 30 90.0 0 C.A..........C................ | ========== ====== ====== ====== ============================== ======================================= ================== 12 30 94.7 36 GCTAGCGGACTTATGTCACTAATCTGGTTA # Left flank : CCGCTTTTAGTGTACCCACTTCGGAAACTACGACAGTGTGATCTATATCATTTACTTGGATATCTACCAATCCATAATTTGTTCCCGTTAATTGTTCTTTCGCATAATTATATACATCTTCTGCTGTAGTTAAGCCACTTTTTTCTTCTCTTAATAAAGTTTGGTCTCCTGTAGTTCCACTATTCCCATCGCTATCTATCAAAATCCTCACAGCAAGGGCTTGTTTGACACCTATAGTTGCTCTTCCGCTAAAAGTCTGAGAACTGCCTTGAGAAGTTACAAAAGTGTCATTCCAATCATATGACACTGTGCTTGCGACATTAGGAATGGTCCATGATATTGCTGGACCTGCAATTATCCCGCCTTGGCTAACACTAGATGGTGCTATTATATTTCCAGATGTGCCCTTTATTACACTGCTTACGTTCAGTGGATTTGACCAACCTATTTCTGGAAGAGTGACGCTTTGATTGAGGGCGGTTATCTTCCCATTGTAGCCA # Right flank : CCATCTATCTTCAAGTTGGTCAAATTTGTCAAATTCTCTACACCACTAAGATTAGTAATACCTCCTCTACCCCAAAAACCATCCAATTTAGTGATAGAATCCAATTCCTCCTGTGTCACCATATCATCAACAGAAGATTTTCTTAAATTACTGCATATACACTCAGCCAAGCTAGCATCCGGAAAAACACTACTAATAGCTGTCGGTTCTTGGATTCCTTTGACCGTTTGTGAAGAGGTTTCTTTTTCTGATTCGGTGGATGTTTGACCGCTACCGTTCGAGTTACTGGGTGCATTTGCATTCTCTTCTGCTTGTTCAGGAATAGTCTCTTCTGGTAAAGGAGTAGCTCCATCTCCTGTTGTTGGTTCCGTTTCATTTTCTTCCAACGCTTCAGAAGGTATGACTGGTTTGGATGCTTCCTCCTCTGTTACTGGTACTTCAGATTCAGCAGCGTTTACTTCCGTTGCCAAAACAGTCAGTCCTGGTGATGCAACAACAGT # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTAGCGGACTTATGTCACTAATCTGGTTA # Alternate repeat : GCTAGCGGACTTACGTCACTAATCTGGTTA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.30,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //