Array 1 716-20 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZSO01000113.1 Neisseria meningitidis strain Neisseria meningitidis isolate B047, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 715 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 649 36 100.0 30 .................................... GGCGGATGGCATACGGCGTGCCTTTTCGGT 583 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 517 36 100.0 30 .................................... CCGTCACTACACGAACTGGCGGACTTCTTG 451 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 385 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 319 36 100.0 30 .................................... CGACAACAAAGCCGTCTATGACCTGACCGA 253 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 187 36 100.0 30 .................................... AAGCAAATCATTTTCATAGTCAGCAGCTTC 121 36 97.2 30 ......................T............. ACGTGAGTTTGTCTATGAGTTCGACGGCGT 55 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 99.2 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TTGAGAAAGATTTAAGAACT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA // Array 1 20-781 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZSO01000169.1 Neisseria meningitidis strain Neisseria meningitidis isolate B047, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 20 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 86 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 152 36 100.0 30 .................................... CTTTCACTTCAGTAATGGCTTCGGCATATA 218 36 100.0 30 .................................... TAAATTTTTGATTTTGATTTTTTCTATACA 284 36 100.0 30 .................................... GTGGGAGTTCGTCTATGAATTCGATGGCGT 350 36 100.0 30 .................................... TTTGCTGCCCGACAATGCGCGTCCGCAGAT 416 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 482 36 100.0 30 .................................... TTCCAAAGTTTTAATTTATATTATTTTAGT 548 36 97.2 30 ............................A....... CAGAAGATGATAACTGTGCTGGGGGTGCGT 614 36 100.0 30 .................................... ACGCAATAACGGCGAGTTTACGCATCAATG 680 36 100.0 30 .................................... TAACGATTGAAAGTGAGTATGTATTAAGTA 746 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 99.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TAAGAACTAAGTTCCCATCG # Right flank : TACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTGTCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //