Array 1 208812-207884 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPVY01000003.1 Pasteurella multocida strain HNA19 Contig003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 208811 28 100.0 32 ............................ ATTAGCTGAAGACCGATTTATTAGAAATACAG 208751 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 208691 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 208631 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 208571 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 208511 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 208451 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 208391 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 208331 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 208271 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 208211 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 208151 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 208091 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 208031 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 207971 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 207911 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.6 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTGGTCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATACTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 92503-91336 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPVY01000005.1 Pasteurella multocida strain HNA19 Contig005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 92502 28 100.0 32 ............................ TTATCGCGGAAGTCAGTCGCCATAATGGCGTA 92442 28 100.0 32 ............................ ATTTCAGGTGAGCAGTGGATGATTATCCCGAG 92382 28 100.0 32 ............................ ATGTGTCTAAATCGGGGTAGATTTCCGCGAGC 92322 28 100.0 32 ............................ AAAATCTCTGGAATTTGTCGCATATTGCCTTT 92262 28 100.0 32 ............................ GTTGCAAGGTTGTAAGCTGTCCCCGCGTATTC 92202 28 100.0 32 ............................ ATGAACACATGATCACTTCTTGATGGATCAAA 92142 28 100.0 32 ............................ ATCAACGGGAGCGTAAGCGAAATGAAGAAACG 92082 28 100.0 32 ............................ AAGTGTCCGCGCTCACGTTAATCCCCGTAAGC 92022 28 100.0 32 ............................ AAGCCACAGCGCAGATGAGCACGTCATCACGT 91962 28 100.0 32 ............................ GATCCAAGCGTTACAAGTGAATCGTGGCTCTT 91902 28 100.0 32 ............................ AAGCACTATGCCGATAGCTCCCCAAAAGTCAT 91842 28 100.0 32 ............................ TAGCAATGGCAACAGCCTTTTTTATTATAGTT 91782 28 100.0 32 ............................ TCGCCTTTTGTCGCAAACCATTTGCGCACCCG 91722 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 91662 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 91602 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 91542 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 91482 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 91422 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 91362 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 20 28 98.4 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //