Array 1 8070-6843 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSVV01000004.1 Actinobacillus pleuropneumoniae strain 780 contig_chr00004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8069 28 100.0 32 ............................ TAAGTCATTGAATATAAAAGCTGACATCCGAT 8009 28 100.0 32 ............................ AGCATAAAAGCGGTAAAGCTCGCCTTTTGCAC 7949 28 100.0 32 ............................ AGCTAACCCGTGATATTGCAACGTTTACGTTG 7889 28 100.0 32 ............................ GAATTAAGCACAGAAGCACCTACGAACGACTT 7829 28 100.0 32 ............................ GATTGACAGCGACTGGAAACCAGCAGGCGCAA 7769 28 100.0 32 ............................ TGTTTTAGCTGCTCAGCAATCGTCTTTTTCAT 7709 28 100.0 32 ............................ AGACTTCTCAAGTAAAATGACTTTTTCAGCAA 7649 28 100.0 32 ............................ TTTGAGAAAAAGGAGAAAATGAAATCTCAAGC 7589 28 100.0 32 ............................ TACAATTTTACGCACACGCTTAACAATACTTT 7529 28 100.0 32 ............................ TGCCACATTTAACCGCTCTTGCGTGTAGATTT 7469 28 100.0 32 ............................ AAATTGTGCTTATCTTTAACTTCACCGGTTTC 7409 28 100.0 32 ............................ TACGCCTGAACCCTGTCCTTTCCCATTACCGT 7349 28 96.4 32 ...................A........ TTATGCTGATAAAATGATTCTTAAAGAAATAA 7289 28 100.0 32 ............................ CTACGGGTTGGCTACGCCAAACCTTGACAATC 7229 28 100.0 32 ............................ ATATCCACTAATAAAAGTATGGCTTCGCTTTC 7169 28 100.0 32 ............................ TTTTTAAAGGCTTCTAAAATCACTGAAGAAAC 7109 28 100.0 32 ............................ ACACCAAAACTATGCCGGTAATCTTTATTTAA 7049 28 96.4 32 ........................T... ATTCGCCCCGACGATAAATTTCTAACTGCTCC 6989 28 100.0 32 ............................ AATGTTGAAAACACTCGGTTGGTGGGGGAAAA 6929 28 100.0 32 ............................ TCTAGTAAAAGTCCAAGCTGATGACTGACTGC 6869 27 89.3 0 .....................C-.C... | ========== ====== ====== ====== ============================ ================================ ================== 21 28 99.1 32 CTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TAAAAGTGCAATTAACTGCAGAGGGCTTACAAGACTATGCTCTTATTACATCGGTAACCCCTATTCCGGAAGAGATAGCCGAGCATCGCCGTTACCAAAGAGTGCATAGAAAAGGTCAAAGTGCTATTCGCCGTACCGAGAAATTCTTAGTTCAACAAGGAAAATGGACTGAAGAAATTCGCCAAGAGATGTTAATACATCAGCAGAATCAAAAAGTATTTCCGTACGTAAAACTCAAGAGTGGTAGCACTAAACAGCATTTTGTATTAGCGATACGACAGCTTCGTTTAGCAGAGCCTGTTTCCGGCCTATTTAACGCATATGGATTAAGCAAAATAGCAACCGTCCCACATTTCTAACCTCTTTTATAACCTTTTTTTCAAGAGAATTTATTTTTCCTTTAGAAACAAAGGGTTATAAAAACCGCTCAAAAAAGGGATTTTTTGATTAAAAGCTCTTTAACAACTTGGTATATCTGACATTCTAAAGTAAAATAACGA # Right flank : TCAACTGTATTCCATAAATAACATCGGAGAAAATAATATGAAAAAAACACCTTATATTCCGTCTTCGGATTTAAAGACGATTTTACATTCTAAGCGGGCGAATATTTATTACTTAGAACACTGCCGAATATTATTAAACGGCGGGCGTGTAGAATATGTTACCGATAAAGGCAATGAATCTCTCTATTGGAATATTCCTATTGCCAATACTATCTGTTTACTATTGGGAAGTGGTACTTCAATAACTCAAGCGGCAATGCGAGAACTGTCAAAAGCAGGGGTTATGGTCGGTTTCTGTAGTGGAGGCGGTACGCCGCTATTTAATGGGACGGAAGCAGAGATCGGTTGTGATTTTTTTAGTCCTCAAAGTGAATATCGTCCGGTCGAATATCTACAACAATGGTGTCGATTTTGGTTTGATGATAACAAGCGGTTAAATTCGGCAAAAACTTTACAATTGGCACGGTTACAATTACTACTTCGAACTTGGAATAAGTTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //