Array 1 1-685 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGUB010000063.1 Limosilactobacillus reuteri strain O_Tuki_7_1 scaffold63, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1 30 83.3 30 ------.............................. TAAAGCTGAGGGAAATACGGCAGAAGCTCA 61 36 100.0 30 .................................... GAAAGCGAGGATGATTAAACATGGCTCAAT 127 36 100.0 30 .................................... GAAGTAACAATGTTATTATAATAATGTAAG 193 36 100.0 30 .................................... TAAACACGGGTTGCCCATCATTGCTGACGG 259 36 100.0 30 .................................... AGCCATTGCCACCCAGCTCCTTTACGTTTT 325 36 100.0 30 .................................... CTGTCATAAGAAGACTTGTCTGGGTCAAAG 391 36 100.0 30 .................................... CCACAAAAGTAATTAATGGTATTCCCAAAG 457 36 100.0 31 .................................... TTTAACCTAACAGTTACCACACCAAGTGACG 524 36 100.0 30 .................................... TGATAATATTATCATAATCAAATTCTTGCA 590 36 100.0 30 .................................... TAAAAAGCGTTAAATTGCGGGCAATTGCAT 656 30 83.3 0 ..............................------ | ========== ====== ====== ====== ==================================== =============================== ================== 11 36 97.0 30 GTTTTAGATGTACTTCAAATCAATAATGTTTAGAAC # Left flank : | # Right flank : | # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGTACTTCAAATCAATAATGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 1-286 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGUB010000062.1 Limosilactobacillus reuteri strain O_Tuki_7_1 scaffold62, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 28 77.8 30 --------............................ TAAAAAGCGTTAAATTGCGGGCAATTGCAT 59 36 100.0 30 .................................... TACGCTCATGGCTAACCCCTGCTTATATTC 125 36 100.0 30 .................................... ACTAAAGTGTTTCCAAGCTTGGCTACAGGA 191 36 100.0 30 .................................... AAGATATTGATATTTATAACGAATTATTAA 257 30 83.3 0 ..............................------ | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 92.2 30 GTTTTAGATGTACTTCAAATCAATAATGTTTAGAAC # Left flank : | # Right flank : | # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGTACTTCAAATCAATAATGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 1624-2320 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGUB010000161.1 Limosilactobacillus reuteri strain O_Tuki_7_1 scaffold161, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1624 36 100.0 30 .................................... TGTACGAAACGAATAAAAGAAAGCCTAGCC 1690 36 100.0 30 .................................... TTAGTGGACGGCGCTTGGCCTATGGTTATT 1756 36 100.0 30 .................................... TATTCTCGTACTCAGGGGGGTCCAAATATA 1822 36 100.0 31 .................................... ATGGAAAGAATGCCCAACACAGTAAGCTTCA 1889 36 100.0 30 .................................... CAACCGCAAAAAGCCTGAAAAACAACGGCT 1955 36 100.0 30 .................................... CTACTAAGAGTTCTAAGACTATGCGTCACT 2021 36 100.0 30 .................................... CACTTTGTAAGTCAACCTTCGTCATATTGT 2087 36 100.0 30 .................................... AAGACTTTGGAAAGATTGGACGAAGCATAG 2153 36 100.0 30 .................................... ATGCAAGACTTTCTAAGTGAAGTTGAGCGA 2219 36 100.0 30 .................................... TACACTTAAATACTGATTTATTAATGACTT 2285 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 11 36 100.0 30 GTTTTAGATGTACTTCAAATCAATAATGTTTAGAAC # Left flank : GAATAATAATTTAGCAACAATTTATTCAACGGAAATTGTAAAGTCAATAATAAAAAATTTAACAGAAGAGGATCGTCATTTACTAGATGCTGAAGCACGTCGACTTTATTCGAATGTTCAAGAAATTTTATTTATGACAGATTTACCGCTCGAAGTTCGCTATGATGGTGATATCAAACGATTATTAAATTATTGTAAGATTAAATTTTCACCATTAGTTCAGCAAAGTCCTTATGATATAATAAAAACAGATTTAAAGTTACATTTAGAATGTGCTGATAGTTCATGTGTTGGGTTAAGTAATGTCGCTAATTACCTAGATTCAGCTCAATTTAACGAACTACAACAACTAAACATTGAATTGAAAATTCCTGTTTTATTAATAGAATTCACAGAAATAGATAATCGTAGATACTATGGAAATGCGAATTTTTATTATATTGACAGGGATTTCGTTGATTGGAAGTTATAAACTATTAATTCAAAATTAGAAAATAATG # Right flank : TAAAGCTGAGGGAAATACGGCAGAAGCTCAGTTTTAGATGTACTTCAAATCAATAATGTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGTACTTCAAATCAATAATGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 11973-10817 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJGUB010000147.1 Limosilactobacillus reuteri strain O_Tuki_7_1 scaffold147, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 11972 36 100.0 30 .................................... AATCAAATATGGCAAATGAAGTAACATACA 11906 36 100.0 30 .................................... ATGGTGTGCTGTTTCAATTTGGTAATAAGA 11840 36 100.0 30 .................................... AAACACACCAATGAATATCTGTTAGAGCGG 11774 36 100.0 30 .................................... TTATTTTGACTTTTTACTAGCTTGCAGTCG 11708 36 100.0 30 .................................... TAAAGAGTGGTAACGCTATGCAGTCTGCTA 11642 36 100.0 28 .................................... AACGCGCGCAAAACCGTAGTAACGCAGA 11578 36 100.0 30 .................................... TGCTACTATGAAGAAAATTCGGAACTTGGC 11512 36 100.0 30 .................................... TGCTGTTAATCCCGTGGATGGGGATGCTAG 11446 36 100.0 30 .................................... AAGATATTGATATTTATAACGAATTATTAA 11380 36 100.0 30 .................................... TCTACCGGCGGATGACGATTGTTGAGCCTT 11314 36 100.0 30 .................................... TTTTCAAGGTGGGAAATCATGGGTGGAAAG 11248 36 100.0 30 .................................... GATCAAATTAACAATGCAGTACGTTCTATT 11182 36 100.0 30 .................................... TCTCGATGACAGTGGTTAATTCCCTCGTTA 11116 36 100.0 30 .................................... CTAACTAACTCGCTCAAAGCAACAGTTGAG 11050 36 100.0 30 .................................... TTGGTAATTCAATGGCATACGGATGTTACT 10984 36 100.0 30 .................................... TCAAAAGCTTCGTCGGTAGCCTTCTCATCG 10918 36 100.0 30 .................................... AAAGCAATCAATGAAAACAGAATACAATAT 10852 36 91.7 0 ........................G...A......T | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.5 30 GTTTTAGATGTACTTCAAATCAATAATGTTTAGAAC # Left flank : GATGTACTTCAAATCAATAATGTTTAGAACAAGATATTGATATTTATAACGAATTATTA # Right flank : AAATATTAGTCGAACTCACGGCTGAGAAAAATCTTAAATATGCTTCAAATTTCCCCGCCAACTTCAGCGGGGCTTTTTCATTTTCTTTTCAAATTAGTGTATAATATTTACTAAACCCATTACTAAAAGAGGTGAAAAATAATGGCAACAATTAAAGAAATTGCGAAAAAGTCAGGGTACTCACCAGCAACGGTTTCGCGCCTTTTGAATAATGACCAAAATTTATCGATCAGTCCAAGCACCCGCAACAAGATCATGACGGTGGCTACCGAGCTTGGCTATTGGAACAGCCACAAGAAAAACTCTCAGCAGCAACCAATTCGTCCTAATCTTGCTCTATTGTATCGGGTAAGCGGTAAAGAACAACTGCAAGATGAATATTTTGCGTTTTTACGCAATGCAATTATTAAAGAAGTCGATGAGGTGGGAGCACAGGTTGAGATCTTTAGTAATATCAAAGATTTAATTGCGACGGCTGATTCGTTCCAAGGATTTATTGG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGTACTTCAAATCAATAATGTTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //