Array 1 708566-707725 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYG010000001.1 Listeria cossartiae subsp. cossartiae strain FSL L7-0253 NODE_1_length_980150_cov_70.681163, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================== ================== 708565 29 96.6 35 T............................ CCCGTCCAGACAGTTTGTGTTGTCTTACTATCCAC 708501 29 100.0 37 ............................. TAAAAAAGTAAATGCTAATGATGAAGATTATAAGTAT 708435 29 100.0 35 ............................. TAACCCGCAACAGCTTTGATATCTTGAATACCTGT 708371 29 100.0 35 ............................. CTTTGTCCGGTGATTAGCTCCGTCGCTGACTTAAT 708307 29 100.0 38 ............................. ATACTTGTTATAGTCGTACACAAGAATAGATGTGCCTG 708240 29 100.0 36 ............................. AGCATTTCGCGCGCATCGTCTGGAGTGGTAATCATC 708175 29 100.0 34 ............................. CAAACGCTAGGAGAAGAGATTATGGCACCTCTTA 708112 29 100.0 36 ............................. ACGGATACTCGATTGGCGTTACAGCACCCACTCTGT 708047 29 100.0 36 ............................. TCTTTAAATGTTTCAATGAACACATGCCATGTATCT 707982 29 100.0 37 ............................. GCAGCAAGCAACTTCCATAACATGTTACCGAGCCCTT 707916 29 100.0 36 ............................. ATCGGTACGCCTATTGGAGCAAGTCAAGAAGGTACA 707851 29 100.0 68 ............................. CATGCTTCATCATTGCTTGTGTAAATGTAAATCGACCAGGTACAGCAGCTTATCAGTGACCGAACCGG 707754 29 86.2 0 ...............C......CC....C | A [707729] ========== ====== ====== ====== ============================= ==================================================================== ================== 13 29 98.7 39 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACCCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCGGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGGCAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGGCAACAAAGGTGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTTAGCGGAAATCTGAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : TTCCTCTCAACATCCAAACTCCAAAAATAAAAAAGACCTGGATCCCAATCCAAGTCTTTTCCCCTACCACCTAAACCAACAAAACCACAACCAACGCCACAACCGCCGGCAAGCCCTGCTTCACCAAAATCCCTTTAGAAGAAGTCAGCCCGCCAAAAAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATCCCTGCTCCCGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAACCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCTACGCCAAATGTCTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 724385-723510 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARYG010000001.1 Listeria cossartiae subsp. cossartiae strain FSL L7-0253 NODE_1_length_980150_cov_70.681163, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 724384 29 100.0 35 ............................. ATAGTTTTCGGGCATATTTGCAACCATAGTATCAA 724320 29 100.0 37 ............................. ATGTTTTCATTGTAGGTATTGGTACAACATCGGAGGA 724254 29 100.0 36 ............................. TCTTTAGCGGATAACTTGCGTGTGCAACTTATTGAA 724189 29 100.0 35 ............................. TCAAATCTAACGTAGTGAATATTTAATTGAAGTAG 724125 29 100.0 34 ............................. GTGCTATCAATAAATAGTGTGAAAGGGACATTGT 724062 29 100.0 35 ............................. CCTCGCTAACAGTTTCAGCATCAACTTCATAACAC 723998 29 100.0 38 ............................. AATAGCAAAATCTTTATTGTGTACTGTGACACGCGTTC 723931 29 100.0 36 ............................. TTCAATTGGTTTCGTTCACATAGCTTAAAGTTTTGC 723866 29 100.0 37 ............................. TGGATTGTCCGAAACGGTAAAACGACGCACACGAAAG 723800 29 100.0 37 ............................. CTCATTGAAAAAATTCAATTTGTCGGTTTCCAAGATG 723734 29 96.6 36 ..............A.............. ATTATTCAAGCACTAGATGTTGCTAAAAACGCATTT 723669 29 96.6 39 ..............A.............. AATAGACCTAAGTGTGATATGATTTTTTTGAGGGGAAAA 723601 29 89.7 33 .......T....C...A............ CCTGCCATCAGTTGCTTTATTCCTTGCGATTTC 723539 29 79.3 0 AC.....T......A.A......A..... | A [723515] ========== ====== ====== ====== ============================= ======================================= ================== 14 29 97.3 36 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : TGCCACCACTTCAGCTGATATTTTGCTTGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATTGATCTTCCAGAAGACAAGCAATTCGACAAATTAACAACCATTTCTATCGGTCGTATTTTAGGACGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAAGGGTTAATGAAGAAAACAGTAACTTTTAGAGTTGCTGTTTTTTGTTTTTGGTTGTCTGTCGACCTTTGATAGCGTGAAAAATGCTGGGGATCGACAGAAAGGTGAGAGTGATTGGCGTGGAAGGAGTTTGGTGGTTTTTTCTTTTGAAAACCATGTCGGGAAGGAGGGATTTTCGTTGGTTTTTAGTCGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : GAGATTTGACTTTTAAAACCCTTACTCATCTTCCAACCCGAACCCGACTCAACAAGATTCGGGTTTATTTTTATCCCCCCGTTAACAATTCCGCAACAAACACACCAAAAACCCCCAATTTCCTCTGAACCTCCAACTACACCACACACTCAACCTATGCTAAACTCAAAGAGAAAGCCAAAACCACATACATAAAAGGAGGATTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATCCTGGCAAGCTGCTCCTCTCCAAGCGAAAAAGTAACAAAAGACACCAAAATCTCCAAAACCATCACCATCCGAGCAGATTACAACATCCCGAAAAATATGGAAGAACTAGCAAATAACAGCAATAATATAGTCAAAGTAAAGCTGCTGCAAAACAAAGACATTGGCAAAGACGGCAACACCATTAGCGAAGTGGAAATCTTAACTTCCTACAAAGGCGACCTAGAAAAAGGCGATAAAATAGACATTTC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //