Array 1 24998-27539 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNVU01000051.1 Xanthomonas translucens strain XT5770 flattened_line_100, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 24998 31 100.0 35 ............................... TGATAGACCGCTTGCTCCTGCCCGACCGCGCTGCT 25064 31 100.0 35 ............................... CTCGGCCGCCGGCCCGTTTTGCGCTGGCCTTGGTA 25130 31 100.0 36 ............................... TATTTGTGGCCTCATTGGGAAGGTCGAGACAACGGC 25197 31 100.0 36 ............................... ATATAATGGGCGATGACCTTGGCGGACGTGTTGATC 25264 31 100.0 35 ............................... TCGCCCGGCAACCGCGCTTAGCAACGCCAAGCCCG 25330 31 100.0 36 ............................... TGATACGCATCCTCCAGCCCCAACGCGTGGCGGGTG 25397 31 100.0 35 ............................... AGGTCGAAGCGCTTGCCGTTGTGGGCCACCACCAC 25463 31 100.0 35 ............................... GCTGGCGATCAGCCAGGAAGACGCGCCGACAGGTT 25529 31 100.0 35 ............................... CAGCCCCGCCGGGTGCGGCTCGTTGTGCCAGGACT 25595 31 100.0 35 ............................... AGGTTGCCGCCGTATCGCGGTGCGGTCTCGTCCAG 25661 31 100.0 34 ............................... TTCGCCTGGCTCTGGTCGATGCCCTTCTCGGCTA 25726 31 100.0 36 ............................... CAGCACCCGCAGGGCCTGCATGGTGTCGTCTCGGTC 25793 31 100.0 34 ............................... TCCGGACCCCGCGTCGTAGCTGCCCTTGCTGATG 25858 31 100.0 34 ............................... TCCGTTGGGCCAGGTAGTGATGCACAGCCAGAGT 25923 31 100.0 35 ............................... GTGATGTGTCTATCGCCCCAGCCTGGATGATTCTC 25989 31 100.0 34 ............................... TCGATGCCGGCGGCCTGGCAAATCTCAGTCGCCC 26054 31 100.0 35 ............................... ACGACAGAAGCAATCACAGTTACTGCAATACTGAA 26120 31 100.0 35 ............................... CTGGCCAACCTGGTGGTGCTGGTCTTCACTTCCAG 26186 31 100.0 35 ............................... TTTTTGCGGATGGCCGGCTTGCCATTGCCGATGGC 26252 31 100.0 36 ............................... ATCCCGCACGGCAGCACCTACATCAACGGCGAGCGA 26319 31 100.0 36 ............................... AACACCATGCGCTTGGCGTGGCATTCGTCATAGCCG 26386 31 100.0 34 ............................... GTTTTGAATCGCGTGCTCAAGTGCCTTGTCGTAG 26451 31 100.0 35 ............................... ACCGCCTCGCGTGCAGGCCCTGGCGTGCGCGTATG 26517 31 96.8 35 .............T................. TTGCACGACCCAACCGGCAATACGCGGTGGTGGAC 26583 31 100.0 34 ............................... AGCGGTGCCGGCGGTTCGTCGCGCTACGGCGGCG 26648 31 100.0 36 ............................... ATGACCGCGTGGATCGCGCGTTTGCTTGGAGCGACT 26715 31 100.0 34 ............................... TTGCACGACCCAACCGGCAACACGCGCTGGTGGA 26780 31 100.0 36 ............................... AGGATCGAACGGGCGGGGAGGCATCCCCAGGATGCC 26847 31 100.0 35 ............................... AGCAGCGAATAGTTACTCAGGTCTTTCGGGTCCAT 26913 31 100.0 36 ............................... AGGCGCCACACAGCAAGATATAGCCCGTGAGTTCAG 26980 31 100.0 36 ............................... CTGGCCCTGATCGCGCAACGCCAGCCGAAGGAGAGC 27047 31 100.0 35 ............................... GTGGACACCCTGCAACGGACGCGGGGCCGCAGGCT 27113 31 100.0 35 ............................... ATGGGAAGGCGATGCAATCCTACCCGGCCATGGTC 27179 31 100.0 36 ............................... ATGGCTCAGTCTCGCTGGCGGGTGGCCGGTGTGGCC 27246 31 100.0 35 ............................... ATCACGTACTAGCAGCCCGAGCATCCCCAATGAGG 27312 31 100.0 35 ............................... ATATGCCCGGTAGCGGCCGTCTTCTCCCATACCCA 27378 31 100.0 33 ............................... CCGTACTACGTCACCGGCAACTTCGAGGGTGGT 27442 31 100.0 35 ............................... ACCCATGCCATGTCGTCCCGGCGCCACTCGACATC 27508 31 87.1 0 ......CG.......C.........G..... | C [27533] ========== ====== ====== ====== =============================== ==================================== ================== 39 31 99.6 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATGAAAAGGCCGCCGCGCCATGATGGTTCTGGTCAGCTACGATGTCAGCACGAGTTCCCCCGGCGGCGAAAAGCGACTGCGCAAAGTCGCCAAAGCCTGCCGTGATCTCGGCCAACGCGTGCAATTCTCGGTCTTCGAAATCGAGGTGGACCCTGCACAATGGGCCGCATTGCGGCAGCGCTTATGCGACCTGATCGATCCAGGCGTCGACAGCCTGCGCTTCTATCAGCTCGGCGCGAAATGGGAAGCCCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTGGACCTCAAAGGCCCACTGATCTTCTGACGCGAACCGCAAGCGACCGGGGAAAGCCGGGCAGGTTCGCGCAACAAACCAAGTCATTGATTTACAAGAAAAACACTAACCTCTTCCGCTCACTACAGGTCCGCGGCGGCCCAATTCGATTGCGTCTCCGAAGGGTTCCGCAAAAGTGCGGACTTTTTTCCAACACCCATCAGCACTTATGCTCAGGGCG # Right flank : CTGGCCTGGCGACGATATGTCGTTCTATCGCCTTTGCCCACAAAAAATGGCGCAGTCTCGCGACTGCGCCCAGCGTGCCGCGCCGGCCGGGAGAGAGTCGGCTGGCGCGATCCGTGACTGCGGTGTGCTTAGCGGGACGCGATGCGCATCACTTGACTTCGAATTCCTGCACGGTCCCGGCCGGCTGACCGTTCACGGTGACCTCGGCCTTGTACTTGCCCGCCGGCCAGCCCTTGGCGTTGGTGAAGGAGATATTGGTGGTTTCCGCACCGGCCGTGGTCAGCGTCGCGCTCTGCTCGCCGGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGACATTGGTGGTGGTGGAGGAACCCTCGGTTTTCACCGAGACGATGATGGTGTCCTTGCTGCTCAGCGTGCTCAGCGGCGCCACCGTCTTGTCGGCGCCCGCACTGTTGCCCACGGTCACCGAGGCGACCGTCACCGTGCCGGCAGTGGCCGCGGCCGGCGCC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //