Array 1 56-933 **** Predicted by CRISPRDetect 2.4 *** >NZ_POYZ01000021.1 Campylobacter concisus strain AAUH-10HCdes6 1105965, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 56 37 97.3 40 ......................T.............. CCATTATAGTTAGCATTAAGTTTCTTAATATCTAGACCAC 133 37 100.0 36 ..................................... GATCTTTAATAAATTGTAACATGTTGAATCCTTTAT 206 37 97.3 40 ......................T.............. CCATTATAGTTAGCATTAAGTTTCTTAATATCTAGACCAC 283 37 100.0 40 ..................................... CCATTATAGTTAGCATTAAGTTTCTTAATATCTAGACCAC 360 37 100.0 39 ..................................... TGCTTTTGCCATTAGTCTTTCTTTTAGAGATGCCATTGT 436 37 100.0 40 ..................................... AGAGCTATATAGACACCACATCTATCATCACCACCTAAGC 513 37 100.0 39 ..................................... CACTTGCAAAACCACAAGAAATAAGAGAAAGAATAATTA 589 37 97.3 35 ...................A................. GCCATAGTGTTCTCCTCTGAATAAGATTTAATTTC 661 37 94.6 43 ....TT............................... GTTATACATATAGCTTCTCTTATTGTAAACTGTAGCTTAGGAT 741 37 94.6 38 ....TT............................... GTGAATTCGTCTTTGTCTAAGTACCAGAATGGTTTTTT 816 37 94.6 42 ....................C..T............. ACTCCAGCGATGAACGCTGCAACTATCTTAGCTTAGCGAGAA 895 37 94.6 0 ...................................TT | T,A [906,928] ========== ====== ====== ====== ===================================== =========================================== ================== 12 37 97.5 39 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : GATCAAGGGGATTGAAACGTACTAAGAGATCATATAATCCCCATCTAACCTTATTA # Right flank : TTACATGTATATGTAAAATATTAGAAATAAAGGATATGGCAATAAGAGATCATAGAAGTAATAGTAAAAGTAGTGAATGTAAAAAAACAATCTTATAGTAAGTAAAATGTAAAAAGTATGATGATGAAAGTAAAATCAAAAATACAATGATAGTAACGGCAGTTAAAATAGAAATAAGCTTTATAATGTCGCTGTATATGGAGATATTATCTCTATAATCTATAATAAGTCTTTATTGCTCATCACATATCTCCTCATAAATTTTTGAGCCTATCTTATATAGTGTATATGCTGATATAGCAATTTTAGTTATAGCCTCTATGGTTGGTATTATTAAAATTGGCATGTTATCTACCTTTTTTGTCTGTTAAAACGTCGATAGCCTTTTTGGCAACATAAAACTCAATAGCAGCTTTAGCGAGCGCCTCTAAAATTAAAACAAATGGCATATTTAACCCTCCCATTTTTGATTTTTTACATATTGGCAAGTGACTTGCTAC # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:0, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 423-11 **** Predicted by CRISPRDetect 2.4 *** >NZ_POYZ01000079.1 Campylobacter concisus strain AAUH-10HCdes6 1106023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ========================================= ================== 422 38 100.0 36 ...................................... TTGTTTTGTTTCTCACCTTTAATAACTACTGAATAG 348 38 100.0 34 ...................................... GAGATGTAGTTTAGATTCCTAGCGATTTTATCGC 276 38 97.4 41 C..................................... TTATCTCGACTTCAAGTAATTCAGCTGTTTCTACAGCAACA 197 38 100.0 38 ...................................... TTTCTTCGCAAGTATTAGAAATATGATTGATCCTACGA 121 38 100.0 35 ...................................... GATCTTTAATAAATTGTAACATGTTGAATCCTTTA 48 38 94.7 0 .......................CA............. | ========== ====== ====== ====== ====================================== ========================================= ================== 6 38 98.7 37 TATTTAAACAAATTTGACCCGATTTAGGGGATTGAAAC # Left flank : AGCTTTGAGCTATGTGATAAAAAAGGTATCTTTGAGGCGCAAGAGCTCTTTGTCTAGCTTATGTCGTTCTTAAATTTCTTTTGAGTTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTGGCTAAAATCTCGCGAAATAGGTTCGCAAATCTGGTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATGCCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATGCCTAAATTTATGGGTTCTTTCACTTATCATTGTTGATTTTACGGAGTTAGTATTTTTTCATACCCATACATTTGCGAACTTTTTTGAGCTTTTCGCGAATTTTGGGTATCTTTAAAGCCGGTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGC # Right flank : CGTACTAAGAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATTTAAACAAATTTGACCCGATTTAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 2 3414-3750 **** Predicted by CRISPRDetect 2.4 *** >NZ_POYZ01000079.1 Campylobacter concisus strain AAUH-10HCdes6 1106023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================================== ================== 3414 31 93.5 50 .......A..G.................... TCCGCGCTTTTTGAAGTGATCGGATACACATACGGAAAAAGTGGGTTTCA 3495 31 100.0 41 ............................... TATGCAGACATAGAAGTTTTGACTAACTACGAAAAGTTTCA 3567 31 100.0 46 ............................... ACAGAATAGTCATCGGTGAAAAGCAATATGCCGTAAGCTGGTTTTA 3644 31 100.0 44 ............................... ACAAAAGCAGGCATCATAAAACTAAAAAACACAATAACGTTTCA 3719 31 83.9 0 .......................AACA.G.. | T [3747] ========== ====== ====== ====== =============================== ================================================== ================== 5 31 95.5 45 ATCCCCTTGATCGGGTCAAATTTGTTTAAAT # Left flank : TTTTAGTAGCTTGGAGTGGTTTACCGACTCGAAAAAGTCTTTTACATCGGCCTTTAGTATCCAGCAGTCATTTTCGTTTATGAAACTGCTGGCTCTGTTTATGGCTTTGTAGGTGGATTTGTGTGGGCGGTAGGCGTAGGAATTTGATAAAAATGTCTCGTCGAAGTATGGACTAAGCTCTGAGTATAGGACTTTTTGAACTAGTTTGTCTTTTATAGAGGATATGCCTATGGGTCTTACGCCATTGCGATTTTCTTTTGGGATGTTGATCTTTCTTAGCGGTTCTGGCGTGTAGGTGCCATTTAATAATGAGCTTATGAGATTGTCTGCGTTTTCGTCAAAGTTCTTCTTAAAATCAGCATACGAGATCTCGTCTAAACCTAAAGAATTTGCAGAAATTTCGTCAAATGCAGAGCTTAAAGCAGCTTTTGTAAATATGTGTTCTAGATTTTTAGTAAACATTTTGAATTTACCTTTTTAAATGTGGTATGGGTCGCTAT # Right flank : TAAGTAAAAGAACTTATTTTAAATATCTTTAAAATCACAAATTTTTGAAATTTTAGCCAAAAAGATGGAAATTTAAGCTAAAAATCAAAAGTGGTGAAGGTACGCACAAAATATACAAAAAATAATAATTTTTAAACAAAAATTTAAAAATCATAAACATTTACCTTTAAATCATATATAATAAGACAATTTTAAAATCGAGCGTTGAAGTGAATAACGAAACTAATATGATCTTGACCTTTTCTAGCGATATAAGGGCGACAAGAGATAGTCTTGGCATGCTGATAAAACTACTAGAGCTTAATAAATTTATCCCCAAACTTAAAATAAATAGAAAAAATGCTCTAAAAAAGAGCATGGTGGGCGTGGTTTTAGACTATGTGAAGATAAGGAGTTTAGATGAGGTATGCCGAGCTTAGAGTGAAATTTGAGCCGTCACAAAAGCCGCCATTTTTTATTGGCTCGCAGGTGCGAGGAGCCTTTGGGTATGCACTAAAAAG # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:-0.06, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCCCCTTGATCGGGTCAAATTTGTTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 10546-8995 **** Predicted by CRISPRDetect 2.4 *** >NZ_POYZ01000091.1 Campylobacter concisus strain AAUH-10HCdes6 1106036, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 10545 30 100.0 37 .............................. ACATAACTGGTTCTGTTGATTATCATCCCAGCAAAGA 10478 30 100.0 35 .............................. CATACCACGCCGAAAGCTCATCGAAATCCTGCGTT 10413 30 100.0 34 .............................. ACAAGCTCGTGAGATTTTGGCTCGAAATAAAAAT 10349 30 100.0 37 .............................. ATGAGTAGATAAAATGCTTAGTTTAATCATTGGTCCG 10282 30 100.0 39 .............................. AATGCTTTTTGGTTTAGCAATTTTAAGAGTTGTGAGGAT 10213 30 100.0 38 .............................. GCGTTTGCAATATTGCCGTTGTTGTTTTCTAGCATATC 10145 30 100.0 37 .............................. AAAGATCATAAGCTTAGCTTTAAAGTAGTGCTTATGA 10078 30 96.7 36 ..................A........... CGCCCCTAAAGCTACCAAGCCTAAAAGCCCAAAACA 10012 30 100.0 37 .............................. TATAGGGGCTATCTTATTTTTGAGCTTTGTAGTTGGC 9945 30 100.0 34 .............................. TCTATTGCTTTGTCGATTACGGCGCTAACCCAAG 9881 30 100.0 37 .............................. CTTGGAAAGAAAGCGACGAAAAGCAAACTTGGTCTAG 9814 30 100.0 36 .............................. AACTGGTGAAGTTGGCCTATAAGCTCTCCACTTCCG 9748 30 96.7 35 .........................A.... GCGTCACTTTGCAAAAGTCACTAACCGCTCCGCCG 9683 30 100.0 36 .............................. TTTATCGCCGTTGAAACAAAATCCCCTTATTTTGTA 9617 30 100.0 36 .............................. TCAACAGTCTCAGGCGACCAACAACCAACTGGAAAA 9551 30 100.0 34 .............................. GTAGATTGATTGATTGTATTGTTTGGCTGCTAAA 9487 30 100.0 36 .............................. AAAGCGTGGCAGCACCCTCTTTTCCATAACCAATAG 9421 30 100.0 34 .............................. ATTCGTCAAAAGCAGAATACAAAGATCGACGGCT 9357 30 100.0 37 .............................. GTGGTTTTGTTTCTTGGCGTGGCACCGAGTGGATAAA 9290 30 100.0 36 .............................. CCTATACCACTACCAGCAGTCCAAATGATAAGCTCT 9224 30 100.0 38 .............................. CACACTCAAGATACGTTTAACAACAAAGACTATAACGA 9156 30 100.0 34 .............................. GTTGAGCTTGTAGGTAAATTTTACAAGGCTAACT 9092 30 100.0 38 .............................. GAGATAAAGCTTGCGACACGACAATAAGACTTTTTTGC 9024 30 96.7 0 ...........G.................. | ========== ====== ====== ====== ============================== ======================================= ================== 24 30 99.6 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : AGCTAGATCCTCGTATCGGCTTTTTGCACGAGCCAAACTACCGCGCGCTAAGCCTACATCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGAGATACGCTGATTTTTAACATGCTAAATAAAAAAGAGATCACCGCAAAAGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAAATTATCTCGCGCCTTTGTGAGACGCTCACGGTGGGTGGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGCAAATAAGCTTAAAAAGTGCATCTGCGAGGACGCGCCCTATGAAGGCTTTGGGTCGGAGTGAAATCGCATTTTAATAAAGCGTTTTTTAAGATTTTAAAAAGCTTGAAATTTGGGGCTTGGCGTATTTGCACATGGCTAAAATTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCACTAGAATGCCTATAAAATAGGCTTTTTGGTGCT # Right flank : ATATGTTTTCAACTTAATTTTTAGTTTGACATATTAAATTATTAACATGAGTATTGATATTTTAAAATATTTCTAAAGAAGTTGGACCCAAATATGGGTCCGAATAAGGTAGTTATAGACCTTCAAAAGGGTTTGAAACTACGTCTTTGCGATCAACTATGTAAGGTATGATAGCTGCGTGGCGAGCTCTCTTGATTGCTTTTTCTACCATCTCTTGATATCTTTTTGATGTGCCAGTTAGGCGTCTTGGCATGATTTTAAATCTCTCTGACAAGCAATACTTTAAAAGTGAAGTATCCTTGTAATCTATAAAATCAATTTTTGCTTCTGTAAATTTGCAATATTTGCGTGAATATTTTCTTTTTTCTGCCATTTCTTTATCCTTTAAAATTAAAACGGTATTTCGTTATCGCCTTCAAAATTGTCAGCGTCAACATTTATATCAGGGATTTTCTCTTCATAATACTCTTGTTGCTTTTTATTTTGTGGCTGTGCTTGCT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //