Array 1 324882-322634 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMXA01000001.1 Thauera sp. 28 Cont1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 324881 28 100.0 32 ............................ TTACTCGACAACCGGCGCAACTACAGAACTAC 324821 28 100.0 32 ............................ TCGTGGAGGGTGGCGCCGGTGGCGTAGCCCTC 324761 28 100.0 32 ............................ GTTTCGCGCTACGGAGATTTCGCGGTGTCCCA 324701 28 100.0 32 ............................ GCCTCGCCGCGCGCGGCTACACCGCCCCCCAG 324641 28 100.0 32 ............................ TTGACCAGGCTGGGGTGCATGGGTTTGTCGAT 324581 28 100.0 32 ............................ GAAGAGCTCGATGTGCTGTCGCGCTGCTCGGG 324521 28 100.0 32 ............................ TGGTGGGTGCCGCGTCAGGCGGCGGTGGGAAT 324461 28 100.0 32 ............................ TCGAACTCTTTCGGGCCTTCAGTTTTGGTTAC 324401 28 100.0 32 ............................ AGCACGATGGGCAAGTACGTCGAGTTCATGGA 324341 28 100.0 32 ............................ GCCACGAGGCCCTGCGCCGCACGGCCACCGTG 324281 28 100.0 32 ............................ TATCAGAACGCCGACGCCGACTATTACAACCT 324221 28 100.0 32 ............................ AGAGTGGGGTCGGGCAGCACCGCCTTGATGTT 324161 28 100.0 32 ............................ GAATCCGTCGCGGCCTCGCTCGGTATCCAAGG 324101 28 100.0 32 ............................ CGCCGGTTGCCCGCGCTCTGGTCGAGGCGAAC 324041 28 100.0 32 ............................ GAACACGCTCCCAAAGGGGCGGCATCGGATAC 323981 28 100.0 32 ............................ TTCGCCAGCGCGGTGCAGCCCTGACTGCATCC 323921 28 100.0 32 ............................ GCTGCAGACCAGCGCGCAGACACCATCGCCGA 323861 28 100.0 32 ............................ TGCAGGAATCGTTCTTTGCCGCGATCCATTCC 323801 28 100.0 32 ............................ TGTTTCCTCCGGGCGATTTCATGTACTGGATG 323741 28 100.0 32 ............................ TTGCTCAGGAAGATGCTCGGGCACGGCAGCGA 323681 28 100.0 32 ............................ TTCAAGGCTGCCGTCAACTTCGGGTGAAGCTC 323621 28 100.0 32 ............................ AGCTGCGCACCGCCATCGTGCGCGCCCGCGAA 323561 28 100.0 32 ............................ CGCGTGAGAAGGGGCTGGGAAGGACCCGCGAT 323501 28 100.0 32 ............................ AGGATGCCCCCGACGCCGGCCGGGTCAATGCC 323441 28 100.0 32 ............................ GGTAACAGTCTTAGCCGACGCAAACGCAGTCG 323381 28 100.0 32 ............................ ATGACCGAAGCCACCCTGCAAGCCCTGGCCGA 323321 28 100.0 32 ............................ ACAGCCGAACCCAGGCCCGATCGAGCAGCGTG 323261 28 100.0 32 ............................ AACGAGAAATCTACTCCCCCCACCCGGGCCCG 323201 28 100.0 32 ............................ ATGCAAATCCGTCTGCGCCGGGGGTTCTCGCG 323141 28 100.0 32 ............................ TTTGGCAAAAAACTGACCGAGTCCGTGGATGG 323081 28 100.0 32 ............................ TTGGCGAGCGCCTTCAAGTCCTGCGTGATCTG 323021 28 100.0 32 ............................ ATGTCGCGGCCCTCACTTGTTGAGCATTGCCA 322961 28 96.4 32 ...........................T GAACAGCGAGCGCAGGCGGCAACACAGTTCGA 322901 28 100.0 32 ............................ GCTACCAGCGAGGCGCCATGCAGTCGCAGAGG 322841 28 100.0 32 ............................ GGGCGAGTCAAAAGGATGCGAGCGACGACATG 322781 28 100.0 32 ............................ AGAGAGCGGTCGGATCGAGGTCCTCAACCTTC 322721 28 100.0 32 ............................ AGTGAGACCACATTGCGCGACCTGAGTGTCGG 322661 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 38 28 99.9 32 GATCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : AGTCTCGATCGGCTCATGGCGATCGGGTGGATGCAAGGCATGCGCGACCACGTCACGATCACCTCAGTCCAGCCTGTGCCGGCCGGAGTACAGCATCGCGTCGTGCGCCGCGTTCAAGCCAAGAGCAGCCCGGAGCGCCTGCGCCGCCGCCTGATGGCCCGCAAATCGATCGACGCAGAGACAGCTCGAACGGCGATTCCAGACAGCGCGGCGGAGATGCTGGAACTGCCCTACATCGAGATCGCCAGCCGCAGTACGGAGCAACGATTCAGGCTGTTCATTGAACACGTGGAGCCCGTACCGACGCCACGCGAGGGCACCTACGGCAGTTACGGCCTCAGTTCGAGCGCAACCATTCCGTGGTTCTAGACCCTTTTTTCTGGCACGGGAAAGGGATGCTATGGAATCAAGGCGTTACGACCCCTGCCAGGAATTGCGTGCGACACACCCGTTTCATGATTTCTCTTTAACAATTAGACTCTTACTGCTTCAGATGTCTA # Right flank : TTCGGGTATTCGGAATAGCCGGTTGATGAAGGGAACTTCTAACCGGCTTCCGAAGGCGGTGTAGTGATGTTGATGGGAGGCTCCAAGAAGCGCTCCAAGAGCTTCCCTATAGGCACCCCCATGTCCACCATGGCGGGTGCCTCTCGTGCAAGGTCAGCGTCCGTAGGGACGCCATAGCCCATTGTGAAGGGCGATTCCCGGCGAGGCTTTTCCTTGCGCTTCATTCTGTGCTCGACCGAGAACAGCATCTTGGCCCGGAACATCTCGAACGACATGCTCCGTGCGGCCCTGTTCAGGTCTTTCATTTGCCGGTTCATCGACTCGGTGAAGGCATTGGTATTGCGCTTTCCGTCACCGAAGTAGGCGAAGATTTCCGCCTCCCAGTTGCTCATTGCCGTGGTCAGCGGCGCCCACTGGGGGCGCTCCTCCGGGGTCAGGCTGGAATGCCAGCGCCGGTACTCTTCCTTGGCGTCAGACTCGTTTTCCAGATTCCAGATGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 224087-223020 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMXA01000002.1 Thauera sp. 28 Cont2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 224086 29 100.0 32 ............................. GGAGAGCAACGAAACAGAGCGCTGCTCACCGT 224025 29 100.0 32 ............................. GACGATAGAGCGCTTCAGGCCACGCTGACTTC 223964 29 100.0 32 ............................. GCGTCGAGTACAACCGCATCGGTCGCAAGACC 223903 29 100.0 32 ............................. CTCTCGTGGCCCTGCTGGAAGACTGGGCCGAC 223842 29 100.0 32 ............................. AAAACGGAAGCCGTGACGTTTCGTCACACCTT 223781 29 100.0 32 ............................. AAGGGCGAGAGCAGCGGGAAGAAGGAAGAGGC 223720 29 100.0 32 ............................. CCACCCGAAGGCGGCTTGTCTGTATTCGATCA 223659 29 100.0 32 ............................. GCGGACGAGTCGTGGCGGTCTAAGCCGCATTA 223598 29 100.0 32 ............................. AAGGCCGAACTGCTGGACACGGTGCGCCTGAC 223537 29 100.0 32 ............................. GCAGCGTACCCAGTGATGGGAGTAGAGGCCGC 223476 29 100.0 32 ............................. GTCCCAGAGGCACTGCCCAGCAGCTTAACTGT 223415 29 100.0 33 ............................. CTGAACTGGCGCACTTCCTTGTCGGTCATGCCG 223353 29 100.0 32 ............................. GATTTTTGTCGATGGGCTACTTAAAGACTCGC 223292 29 100.0 32 ............................. TTTTCACGCCTCACTAGGCTGTTTCTGCGATG 223231 29 100.0 32 ............................. TCATCGCGGACGCGCTGGCATCCGGCTCGCTC 223170 29 100.0 32 ............................. CCCAGCGCGATGAGGCGCGCGGCTTCGTCGGT 223109 29 96.6 32 ............T................ TCGCTTGTTTGCTGCGGGCTCGGCGGATTGAG 223048 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.8 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : TGTTCGAGCCGGTTCAAGGTCGACTTGCCCGCCAGCGGCTCGCAGCCCTTGCGCCGAGCGCTGAGCTTGCCCGCCAGCGTGGCCAGCACCGGGTCACGGCGCAACTGGTCGTGGTCGTTCAGGTCCTCGTAGCCGAGCGCGATCCCCACGATCCGTTGCATCACCAGCGTGTGCACGGTGTGTTCGATCAGCTCCGGATCACGCCCATCCTCGAAGCAGGCCGCCACCCGCTCGGTCAGTCGCAACGTGCGATCGACCTCGCGCAGCAACAGCGCGCCCGCATCCGAGCTGATCTGCCCTCCGTCGAAATCAACCGCCACCTGGCGGCCCTCAATACGCTCCGCACCTTGGCTTCGTCCGGTACACTGTGTCGGCATCGCGGATTCCTCCGGAGTATGGTTAAGTCGTTCTCGCAAAACAACTTTCTCATATTTCCGGCCGCGATGCGCCTCCTATCTGTGAGAAATGCGGGCTAGGAACGCGAGGTCTTCGGGCAGCGT # Right flank : GAGGGGGATTCCCAGGCCTTATTAACCCGGCCCTTAAATAAGCTGTTTTTTATATAATGTGCGCATGGAAAAGATCGATGCACGCAAGCTGGGTTCGGAAGGGCGCGAGACGCTGCGCAAGATGGTGCTGCGCCTGAATAAGCAGTCTGGAATGAGCGGCGTGGAGTTGGCGAAGATCGCCGGCGTCCATGTGCGTACGGTGCAGGCGTGGCTGAGGAAAGCGCGCACGGACGGTGCCGGGGCGTTGCTCGAAAAGACCCGAGGCCGACCCTTTGGGGCGTGCCGGAAGCTGACGATGGCGCAGGAGGTTTGGGTGCGCCAGCGCATCGTGGGCGCGGCGCCCGAGCAGTTGAGCTTGCCTTTCGCCCTGTGGACCCGGCGGGCGATCCAGGCCTTGGTGGAGCAGCAATTCGGACTGCAGTTGTCCGATCGCCTCCTGGGCAAGTATCTGAAGCGCTGGGGCTACACCGCCCAGCGTCCGGTCAAGAAGGCCATGGAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 226590-225829 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMXA01000002.1 Thauera sp. 28 Cont2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 226589 29 100.0 32 ............................. GCCGAGCACTACGACTGCGACGTGCTTTGCAC 226528 29 100.0 32 ............................. CATACCTGCGTGATGCAGGCGGGCTGTCGCGA 226467 29 100.0 32 ............................. CTCAACGACCTCGCCGATGCGCTGGCGACGGC 226406 29 100.0 32 ............................. GCTGTGGAAATCGTGGACGCCTTCTATGGCCC 226345 29 100.0 32 ............................. CTGCAGGGCGGATTCAAAGCGCGCGACTTTGT 226284 29 100.0 32 ............................. TATCAGCGCTTATCACGATCAATGACTCTGTG 226223 29 100.0 32 ............................. CGCCTGGAGGCGGCGGCGGCGCATCTTCACGT 226162 29 100.0 32 ............................. GCGCCGTAGAGGCCCAGGTTCTGCTGCATCGC 226101 29 100.0 32 ............................. CGGTCGCCAGTGCGGCGTGTTCTAGTTCCATC 226040 29 100.0 32 ............................. CCGGTAGCCCTGTGCGGGTCCGCATGATCTGC 225979 29 100.0 32 ............................. GACGAAGCGCCCAAGCGCGGGCGTAAGCCCAA 225918 29 100.0 32 ............................. GTGATGAGGTTGGGGTTGGGGCGCTTGCTGTC 225857 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 100.0 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : GGAACGCATCATCCCGGACATCGAAGAGATCCTTGCCGCCGGCGAAATTCCCCGCCCCGAGGCGCCGGAAGAGTCCGTCGCCCCCGCCATCACCAATCCGAAGAGTCTGGGTGATGCTGGTCATCGTGCTTGAGAATGCACCGCCCCGGCTACGGGGCCGGCTGGCCCTCTGGCTGTTGGAGGTGCGCGCCGGAGTGTATGTGGGCACATATTCGCGCAAGGTGCGGGAGCACATCTGGAACCAGGTGGAAGCTGGAATTGAAGATGGTAATGCGGTGATGATGTGGCACACGAACAACGAAGCTGGTTTTGAGTTCCAGACCCTCGGCCCCAACCGTCGGCTGCCCGCCGACTGGGACGGCGTGCGGCTTGTAAGTTTCCATCCAGACGCACAGAAGAACGATCTTTAAAAACTCGAAAACATGCCAATGGCAATAAAACGAGCCGGTAAAATTCACGCTTCAAATATTTCCATTAAAATTCATGGAGATGAAGGAAGT # Right flank : CGTTCTAGCCCGCATTTCTCACACCCTCACGGTTCGGCCCCCGGTGGTGCGGCTTTTTGCTTCACGCGTCGCCGTGACCGCGAGGGTTCAGGCCCGCGAGCGGCCAATCGAGGGCAGGCGGGTGAGGTTCTGCGAGCGGTCAGGTGCGTTGAGGGGGCAAGCGGCGCTGTTCGGGCATGAGACCGCCTCGCGCGAACGGGAGCGCGATCGGATCAGCAGGGCCACGGTAGCGTGGCGGATCAGCCGGGGGCGAGTCTGGCCTGGGCCAGGCGCCATGCGGTCTGGAATGGATGACTGCTGGCCATGCTGATGTGGATGCGGCGCACGCTGATCTTGACCCGTGCGCCGATCTTGAGCAGTTTCAGGCGCAGGCTCTCGCAGGTGGCGTCGGCCAGTTCGGTGCCAGCCAGCCCGATGCGGCGCAGCGCTTCGAGCATGACGTAGGCGAAGGAGGCGAACCACAGCCGCAGCTGGTTGGCCCGCATCGTCGCCGTCGAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //