Array 1 3387886-3386513 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMGA01000001.1 Mesorhizobium sp. Root554 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================================================================== ================== 3387885 36 100.0 85 .................................... CGAATCCATTGTCGATCATCCACTGTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTACTCGCTGGACCATGTTCGCTTCC 3387764 36 100.0 30 .................................... TCAACGGGTAAGTTGGAAAAAAGTGGAAAA 3387698 36 100.0 30 .................................... CAGTACACCTGCTATAATATGCCGGTGACG 3387632 36 100.0 30 .................................... CATGCCTCCGAAACAGGGCCGTGGCAAAGA 3387566 36 100.0 30 .................................... CATGCGAAGTCGACAGCGTCGACCAGCGCG 3387500 36 100.0 57 .................................... CAGTCGGCTTCATGCTGCGCGGCGAGCTTNACTACTCGCTGGACCATGTTCGCTTCC 3387407 36 100.0 30 .................................... GATCCCGCCGCGCAGCAATTGCTTGGATGA 3387341 36 100.0 30 .................................... CGGCCCGCTGATCTGGGTCGCGAATGACGG 3387275 36 100.0 30 .................................... GGGTAGCCGCAATGATCTGCCAAGCAGGCC 3387209 36 100.0 30 .................................... TAAAATCGACTTCATATATCCCGCTATTGA 3387143 36 100.0 30 .................................... TTGAGGATGTTGCGGAGGATAGCCTGCTCT 3387077 36 100.0 30 .................................... TTTTGCTGTGTTGCAACACGGGGACGCAAA 3387011 36 100.0 30 .................................... AACTATGACGGCGCAACGAAGCCGGTTCTG 3386945 36 100.0 30 .................................... GTGATCAACAAGGCGGCGCGCACCGGCCGC 3386879 36 100.0 31 .................................... CCCTATGGCCGATGAGAAAAAGGAGCTGGAG 3386812 36 100.0 30 .................................... ACGTGCTGTTTTGTATAGGTGCAACCATGG 3386746 36 100.0 30 .................................... CTGCTGGATGTTCTTGACCCAGCGGAGGTT 3386680 36 100.0 30 .................................... GATAGTCATCCGCAGAAGGATACGATTTTG 3386614 36 100.0 30 .................................... TTGGCTGGAGAGAGGGATGCGAGGGCCACC 3386548 36 91.7 0 .............................C..T..G | ========== ====== ====== ====== ==================================== ===================================================================================== ================== 20 36 99.6 34 GTTCTAGCAGGGATCGCGGCGCGGCCCAATCGCAAC # Left flank : GCGACACTTACGGTATCTCGTTCTAGCAGGGATCGCGGCGCGGCCCAATCGCAACGATCATGGTGCGGGATCGTCTGTCGTTCTGGTTCTAGCAGGGATCGCGGCGCGGCCCAATCGCAACGAAATCTGCCAACGACATACCGAAATGATAGTTCTAGCAGGGATCGCGGCGCGGCCCAATCGCAACTTGTGACCGTCGAAGGAAACAGGATTGCGAGTTCTAGCAGGGATCGCGGCGCGGCCCAATCGCAACTCCGCTGGGTCGTCCGCCCCGAACACGAAAGTTCTAGCAGGGATCGCGGCGCGGCCCAATCGCAACTGGCTTGGGCCACTGTAAGCGGCGTCATGGGTTCTAGCAGGGATCGCGGCGCGGCCCAATCGCAACCTCATGACGTCGAATGCCTATGCCTATATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTTTAAGAGGTGGCTTAACAACTT # Right flank : GCGCGCGGCGACCGGCTTGTCTCCAATATGCCCTACCGCCATTGGAAGCCCCTCAGGTTGGCGCTCGAACAGTTCGGTGGCGACATTACAAACGTGCCGTCGATGGATATTTGGAACTCGGGCACCGAAAGCGAGAGGGACTTCCGCGCCCAAAAAGGTAGTGAGTGCAAACTATTTGGGACGTCCTCAACCAGATCACCTGCCTAATTAAGCTTACCTTACCGCATCGAAATCCAGCCCGAACCGCAAAAGGTATTTGCGTAGGCGGTCGGCATCGTTGCCGCTGGCCTTTTGAAGGCGGGAGACAGCGAAGAGCTTGCGACCCGCGGCACTGACAGTGGTGCTTTCGCGACAGACGTCGATCACAGTCGCCAGTTGAGCACGATCGAAGAGGTCGATCTCTTCGACGCGGTCCACGCCAAGGATAGCCCGCAGTAAACTATCCGTGGAAACGTCCTCTCCGGCCGACGCCCAGAGCAACCGGAGGCGCTCGATCTCGT # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAGCAGGGATCGCGGCGCGGCCCAATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.80,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 3388433-3388001 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMGA01000001.1 Mesorhizobium sp. Root554 contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3388432 36 100.0 30 .................................... TCGATACGAGGGCGACACTTACGGTATCTC 3388366 36 100.0 30 .................................... GATCATGGTGCGGGATCGTCTGTCGTTCTG 3388300 36 100.0 30 .................................... GAAATCTGCCAACGACATACCGAAATGATA 3388234 36 100.0 30 .................................... TTGTGACCGTCGAAGGAAACAGGATTGCGA 3388168 36 100.0 30 .................................... TCCGCTGGGTCGTCCGCCCCGAACACGAAA 3388102 36 100.0 30 .................................... TGGCTTGGGCCACTGTAAGCGGCGTCATGG 3388036 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 100.0 30 GTTCTAGCAGGGATCGCGGCGCGGCCCAATCGCAAC # Left flank : TTCCCGCCTCTCCAATTCCGTCGCTTGCAGCCGATGCCTTGCCGTGAACCAGGTCTCGCTGCTGTCGGGGTATCGCATCTTGTGGATCATGGCGCTTTTCGATCTTCCGGTATTGACCAAGGCCGAGCGCAAGCGGGCGAACAAGTTCCGGCTGTTCCTGCTCGACGAGGGATTCTCGATGATGCAGCTCTCCTGTTACATCCGTTTCACGGCAGGCAAGGAGCAGGCCGAGGCGCTCACCCGGCGTATCGGTCGCGCCGTGCCGGATCCAGGCACTGTCGAGGTGATCTGGTTTACGGACAAACAATATGAAGGCATCCAGAGCTTTCGCGGCCGCGCTTCGCCGACCCGGCCGGGTAAGCCTGACCAACTGACCCTATTTTGACACTGATTCGCCGGGAAAATGGCGTGACTAAGCGGCCAAACCTCACTTTTACTGACACTTTTTCATACCTAAACGCACAAAAAACCCCCGGAAAACAAGAGGTTTTCCGGGGGCA # Right flank : CTCATGACGTCGAATGCCTATGCCTATATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCTTTAAGAGGTGGCTTAACAACTTGTTCTAGCAGGGATCGCGGCGCGGCCCAATCGCAACCGAATCCATTGTCGATCATCCACTGTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTACTCGCTGGACCATGTTCGCTTCCGTTCTAGCAGGGATCGCGGCGCGGCCCAATCGCAACTCAACGGGTAAGTTGGAAAAAAGTGGAAAAGTTCTAGCAGGGATCGCGGCGCGGCCCAATCGCAACCAGTACACCTGCTATAATATGCCGGTGACGGTTCTAGCAGGGATCGCGGCGCGGCCCAATCGCAACCATGCCTCCGAAACAGGGCCGTGGCAAAGAGTTCTAGCAGGGATCGCGGCGCGGCCCAATCGCAACCATGCGAAGTCGACAGCGTCGACCAGCGCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAGCAGGGATCGCGGCGCGGCCCAATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.80,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA //