Array 1 1960827-1960126 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023747.1 Streptomyces nodosus strain ATCC 14899 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1960826 30 96.7 31 .............................C CAGCCAGTGCTTGAGGACGGGGGCGGTGCGC 1960765 30 96.7 31 .............................A AGGGGGAGATCTGGCTGGTCGGCCACGGCCG 1960704 30 96.7 31 .............................T CCTCCACGTGAGTCTTCGGGATGACCAGCGT 1960643 30 100.0 31 .............................. TGTACAGCCCCGGCAGCAACTCCGGACGCCC 1960582 30 96.7 31 .............................T CTTCGACGTCAAAGAGTCGGTCGATGAGGCA 1960521 30 100.0 31 .............................. TCCGTCATCACCTGCCGTAGTTCCCGGGCGG 1960460 30 96.7 31 .............................C CACAGACGCGCGCGGGTGAGGCAGCGAAAGA 1960399 30 96.7 31 .............................A ACTGGGCCGTCGTCGCCCGCATGGCACAGGG 1960338 30 96.7 31 .............................C AGGTGGCGGCATGAGCGCCCGCCCGCACGGT 1960277 30 100.0 31 .............................. AGGTGCGGGCGCCCGTCCGCGTGCAGGAGCT 1960216 30 96.7 31 .............................T TCTGCCGGGCTATCAGCGCGGTCGCGAAGAG 1960155 30 90.0 0 ........A.................TT.. | ========== ====== ====== ====== ============================== =============================== ================== 12 30 97.0 31 GTCCTCTCCGCGCGAGCGGAGGTGAACCGG # Left flank : ACACGTACGCGGGCTCGTCGCGCACCGCGTCGAACAGTTTGGGAATCTGAGCCTGGAATGCCGGTGTGATTTTTCCCAAGTCATGCAGCCCCGCCCAGAGGGACAAGACCGACCGGCAATCTTCCCCGTGCAGACCCAGCTGCTTGGCGAAACGCAGACGCGTCCGCTCGCCCAGCAACTCGTCCCATAGCGTCGTGAACGCCGCTGCCACATCCAGCAGGTGACACATCACTGGGTAGGGCTGGCTCAGCCCATGCTCCTTCCCCCACAGCCGAGGGTCAGGGCACGCGGGGACCGAGGGCACGCCTTGAGCTTCCGTCATGCACCCACTTGCTATCAGCAGCCACTGACAATGCCCCTGAACAGCAAGAACACCAACCGAATCGCAAGCGGGCGCCTTACACTGACCGCAAGAGCTAACCACCCGGGAAGTGTTGATGCCTGCCGTTGGCACGAGTAAAGAATTGGCAATGCCCCTATAGCAGTGCAGGTCGCAAAGG # Right flank : TGACGGTCTGGAAGCGCGAAGTGGATCAGCCTCGGAGTCTGGCGGAGTCTGTGCTGGTGGGGTGAGTTTTCAGGGCCTCGACGAAGGTGGTGAAAGCTCTGGTCGGGAAGGAGAGGGTTGCCTTGGCCAGAGCCTTGGAGTCGCGTATGGATACGTGGGTGGGTGACTTGGCGATCTCCACACAGTCGTTGCCGTCGCCGGGGCCCGAGTAGGAGGACTTTCGCCAGTTGCTGGGGGTGGCCATGGTCATGACGCCTCATAATTCCTTCGCCAGCCTGTGGATGAAGTCACGGGACTGGTCGGGTGGGAGCGATACGGCTTCCACTTTACGGAAGAGCGTTCGAAAGGCGTCCAGTTGATCCTCTGAGTCGATGAACGCGGTGCCGTGGGGTGCGTCTCGAACCACCGTGTCGAGCCTGGGCATCGCGCCGCCCGCGTATTTCATCGTGCTGGTGGCTCCGGCGAAGCCGTCCAGATCGAAGGGGATGACGCGCAGGGTG # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGAACCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAACCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1970561-1971565 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023747.1 Streptomyces nodosus strain ATCC 14899 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1970561 29 100.0 32 ............................. TCTTCGACGTGAAAGAGTCCGTCGACGACGCT 1970622 29 100.0 32 ............................. GTCCCGGAGGTGGTCCTGTCACCGTCCGCGAA 1970683 29 100.0 32 ............................. TCGGTGAAAAGTACAGCTGTCATCGCGTGCCA 1970744 29 100.0 32 ............................. ACCGCGTGACTGCTCCCGTTCGGGTGGGCCCG 1970805 29 100.0 32 ............................. TAATCGGAGCAGAACATGCCCTACATCACCGT 1970866 29 100.0 32 ............................. CAGGCCCCCAGGTTGCTGCGGGTGATGCGCAA 1970927 29 100.0 32 ............................. TACAGGTCGAAAGCGAGCCTGCGGAGGTCGGT 1970988 29 100.0 32 ............................. CGTTCATCACCGCCGCCCGGCAGGCGCAGCAG 1971049 29 100.0 32 ............................. ACGTCGCCACCACCGTAGACGGCCCCGGCCCG 1971110 29 100.0 32 ............................. GCACTCCGAGACCAGGCAAAGGCAGCCGAGCG 1971171 29 100.0 32 ............................. TTTCTCGGGTCCGAAGTCGTCGGGCGTCTCGA 1971232 29 100.0 32 ............................. GACACTTCGCCCCCGCCTCCGCCGAGAGGTTC 1971293 29 100.0 32 ............................. GGAGTACCGATACGGTCAGCGCTCGCACAGGC 1971354 29 96.6 32 ...............A............. GTGTCCGACGCCGTGATCGGGGTGCTGTTCGG 1971415 29 100.0 32 ............................. ATCACTGCGAGGCACCCGCCGAGGTCCCGGAG 1971476 29 100.0 32 ............................. TCCACGTCAGTCTCCAGTCGTTGGGGGCTGGT 1971537 29 93.1 0 ..........................CA. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.4 32 GTCCTCTCCGCGCGAGCGGAGGTGAGTCG # Left flank : ACGCATCGTCCACGACCTCCAGGATCTGCTCGACCCCAGCGGCGACAGAGAGGTCCCCGATCCCGAGGAACAACTGGTCGACCTGTGGGACCCGGTAGCCGGGTCTCTCCCCGGCGGGGCCAACCATGGAACCGGATCATGAGCCCCGCCCAAGGGGAGGTACAGCCGCCGTGGCCTCGATGATCGTCCTCGCAGCCTCCGCCGTCCCCGACCACCTACGCGGTGCCCTCACCCGCTGGCTCCTCGAAGTCACACCCGAGCTGTACATCGGCACGGTCTCCGCTCGCGTTCGCGACGAACTCTGGGAATCCGTCACCGCCTGCGCCGACAGCGGCACCGCCGTTCTGGCCTATCCCAGCGACAACGAACAGGGCTTCGAACTTCGCACTGCCGGCGACCAACGCCGCGTCCCGGTCGATTTCGACGGACTGACACTCGTATCATTCACACGAGATAGCAAAGAGATGGCAAACCTGCTTTAGCCCTGCAGGTCACAAAGG # Right flank : GGCGGTCACGATGTCGAGATCACCGATGGCGTGAACCGGCCCTCACCCCGTTGGACGGGCAGGGGCTGTGGGTCTCGGGGCCCCGAAAGGGCCCCAGCAGGTTGTCAGCCGACCACCCGCCCATTCAGCACCACCCGTCGCGGGGCCGCCAGGACGCGTACGTCGGTGCGGGGGTCCTCGTCGTAGACCACGAGGTCGGCCGGGGCGCCCTCCTCCAGGCCGGGGCGGCCCAGCCAGCGGTGGGCGGACCAGGTGGTCGCCGAGAGGGCCTGGAGGGGCGGGATGCCGGCCGTCACCAGTTCCTCGACCTCAGCCGCCACCAGGCCGTGAGGGAGCGAGCCCCCGGCGTCCGTCCCCACATACACCGGGATCCCGGCGTCATAGGCGGCGCGCACGGTGTCGTAGCGGCCTTCGTGGAGTCGTCGCATATGGGCCGACCAGCGCGGGAACTTGGTCTCGCCGCCGTCCGCGAGGCGGGGGAAGGTCGCGATGTTGACCAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGAGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //