Array 1 145177-144380 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_AFYP01000032.1 Lacticaseibacillus paracasei strain T71499 ctg32_00009, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    145176	    36	  97.2	    30	................................A...	ATGTATCCGAGTGGTCCCTCCTCCATCAAC	
    145110	    36	 100.0	    30	....................................	GGTGGCGCTGGAAACTGGATAAACCATTAT	
    145044	    36	 100.0	    30	....................................	AAAGACTTGCAAGGCGTTCAGCGCTTGCTG	
    144978	    36	 100.0	    30	....................................	GAACGAAAGACAGGTGATCAGGATGGCGGT	
    144912	    36	 100.0	    30	....................................	TCACAATTGTTGGCCTATTGCCGAAGTATA	
    144846	    36	 100.0	    30	....................................	CCAAAATATCTGGAATATTGCGTGCCACTT	
    144780	    36	 100.0	    30	....................................	TTGTTTCCGGTGTTCCGATTGAGTATTTGA	
    144714	    36	 100.0	    30	....................................	AATCGCATGAGAGCGTCATTGCGGATTGTG	
    144648	    36	 100.0	    30	....................................	GCTGTGTTGTCATACGTGTAACCAGTGCCA	
    144582	    36	 100.0	    30	....................................	AAAATCAACTCAGAAACAGGCACATCATCA	
    144516	    36	 100.0	     0	....................................	-                             	Deletion [144481]
    144480	    35	  75.0	    30	-CAAA.....AT....A.G.................	AGGAAATTCGAGTTCTTCCCGCAATTGATG	
    144415	    36	  86.1	     0	C............................G..TTC.	|                             	
==========	======	======	======	====================================	==============================	==================
        13	    36	  96.8	    28	GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC	                              	       

# Left flank :   AGCTTGATCTAGATAAACTTTTTCAACGTCTAATCTATAAGAGGATGGAGTTGCTGATTGAGAATCAGCGGCTTGTCGAACTGATCGATCAATCGCAACAAATGGCAATGGATTTACTCCAAGATCCATTCTTGAGCGACTTGCCAGTCACGGTTGAACCAGGCGGTAAGCTCGAACAAATCATGAAATACTGCAACGTTCATTTCGACGAGGCTGTCACGACAGAGTCAACCTCGAAGATTGAGGCGCTTATTCAGACGTTAACTAAACTAGGGGAAAAGAAACTTGTCATTCTTACAAATGTCAGTCATTATTTAAGTGACTGAGATTTCTCTGCGGTGACTGAACAGATCGGCGATACAGAACTTCAGGTTGTTCTCATTGAGTTCTCAAAAGTGAACCGAAGGAAATACTTTGAGAAATGCCAGTATATCTATATTGACGAGGACTTCGTTGATAGTCGCGAACTAGATTGATTAGGAGATTGTGTGAAAACACCG
# Right flank :  AAACAGCAGTGAGACTAAACTGAAGCTAAACTTGTCAAAAAGTGCCTCATTTTGTGACAAAATAAGGTGTTTCACTATTTATTGTGTGAACCAAGCCTCAATATTTACAAAGCTGAACCTTTCAACGTTCAGCTTAAAAGCCGCTGTCTAAAGCAATATCGTAGTAACCACACACTCTCAAGCGGTGATATATCAATCAAAAACTAAGTGCTATCTAACTCCTCTTGTGATAGAATTCATTATACATGAAATCGCTTACACAACGAGGAGGAAGAACGACATGAAAAAACTAATAGTGCTCAGTGCCACACTTTTGGTCAGTATGGGGTTGGCCGCATGTAGTAGTGGATCGAGCTCTAGTTCGAGCAAGAGCAGCAGCACGACTAGCCAGACGAGCAATGCTAAGGTGAAGATTAATACCGGCGCCGATGCGAGTGCCAAGGTGCCGGCAGCCGGTACCTTAGTGATGCGTCAGCTTTATGCTGCACCGCACGGCAAGC

# Questionable array : NO	 Score: 5.85
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.24, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTCAGGTAGATGTCGAATCAATCAGTTCAAGAGC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 95% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-2.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [14-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.28   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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