Array 1 777-138 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNYE01000019.1 Escherichia coli strain MOD1-EC6204 MOD1-EC6204_19_length_88348_cov_22.6206, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 776 29 100.0 32 ............................. ACCGCAGAAAAAACCAGCTGGCCTCGAAAGAA 715 29 100.0 32 ............................. ATCTGGCTCTTCAAAAAACAGCAGCCTGAACC 654 29 100.0 32 ............................. CCGCCATCACAGAACCTTGCCAGACCGTATCC 593 29 100.0 32 ............................. CGCCCAGGATCAGCTTACTGCGCACCGTTTCC 532 29 100.0 32 ............................. GCGGGTTTTTTACGCGTGGGGTTGCAACAGGT 471 29 100.0 32 ............................. AAAAAACAGCAAAAGATGAACAAAATATAAAC 410 29 100.0 32 ............................. GATCTAAAAAGGATCTGCGGAACTGAAAAAAT 349 29 100.0 32 ............................. GGTTAAACATGCCGTTAACGCCATTTCAGCGC 288 29 100.0 32 ............................. GGTATTTATTGTGCAATTAGCTTTGCATTAAA 227 29 96.6 32 ..........................A.. TTTAGCGTAAAGTCAACAATTACTTGGCTTTT 166 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATAAAAAAACTGACT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 40754-39383 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNYE01000032.1 Escherichia coli strain MOD1-EC6204 MOD1-EC6204_32_length_49594_cov_22.1454, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 40753 29 100.0 32 ............................. CGTCCAGTGATAGAACTCGACGACGGAACAAC 40692 29 100.0 32 ............................. ATTTTTTCCGTTAGTTAGTGAGCGTGATAACA 40631 29 100.0 32 ............................. AGGGTTACAGAAAAGAAGCATCGCAACTTGAT 40570 29 100.0 32 ............................. CACAAGAAAAAGATATCGCAGCGTCATTTATG 40509 29 100.0 32 ............................. GTCGCTTTTGGCGGCGTGGGCTAATGCTGGTT 40448 29 100.0 33 ............................. TTTTCGGGACGCACTGCAACCTACCAGGACCGC 40386 29 96.6 32 ............................T GTTTCGCCGCAAATACTACCGCAACGGCGCGC 40325 29 100.0 32 ............................. CGAACAGAAAAACCGTTCTCAGCCAGCGTCAG 40264 29 96.6 32 ....................A........ CAAACGATGAGCGGGCCAACGAATCGCCGTTG 40203 29 96.6 32 .............T............... ATCCACGGTTCGACGCCGATCGCCGTGGCTAT 40142 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 40081 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 40020 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 39959 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 39898 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 39837 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 39776 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 39715 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 39654 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 39594 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 39533 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 39472 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 39411 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //