Array 1 1229090-1227696 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QUQB01000007.1 Listeria monocytogenes strain CFSAN028733 AE020_7, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	=============================	=====================================	==================
   1229089	    29	 100.0	    37	.............................	CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC	
   1229023	    29	 100.0	    36	.............................	ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 	
   1228958	    29	 100.0	    35	.............................	ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG  	
   1228894	    29	 100.0	    37	.............................	TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG	
   1228828	    29	 100.0	    36	.............................	TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC 	
   1228763	    29	 100.0	    36	.............................	CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 	
   1228698	    29	 100.0	    37	.............................	AGTATCGCCTTCGCTAGGCGTTTCGGGCGGCGTTTCC	
   1228632	    29	 100.0	    36	.............................	ACTTTAGAGAAAGAAAAACAAGAAAAAGTAAAACTG 	
   1228567	    29	 100.0	    37	.............................	TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC	
   1228501	    29	  96.6	    35	............................A	GTAACAAGTAGTGTTATACCTGCAACAATACCAGC  	
   1228437	    29	 100.0	    36	.............................	TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 	
   1228372	    29	 100.0	    36	.............................	GTCCACATCGACAATAAAAAACACATTGTATCACTT 	
   1228307	    29	 100.0	    36	.............................	CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 	
   1228242	    29	 100.0	    34	.............................	TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG   	
   1228179	    29	 100.0	    34	.............................	AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC   	
   1228116	    29	 100.0	    37	.............................	ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC	
   1228050	    29	 100.0	    36	.............................	TTGTTCGACGGCTTAGACAACCATCACGCTTCTTTA 	
   1227985	    29	 100.0	    36	.............................	TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 	
   1227920	    29	 100.0	    37	.............................	AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG	
   1227854	    29	 100.0	    36	.............................	GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 	
   1227789	    29	 100.0	    35	.............................	TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT  	
   1227725	    29	  93.1	     0	.......................C....C	|                                    	A [1227700]
==========	======	======	======	=============================	=====================================	==================
        22	    29	  99.5	    36	GTTTTAACTACTTATTATGAAATGTAAAT	                                     	       

# Left flank :   CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG
# Right flank :  GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAACTACTTATTATGAAATGTAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:82.76%AT]
# 	Reference repeat match prediction:         R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [3-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.27,4.91   Confidence: HIGH] 

# Array family : II-A [Matched known repeat from this family],   
//