Array 1 335789-335555 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049244.1 Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 335788 33 100.0 34 ................................. ACTCTGACATGAAGGAAGAACGCCATGCCGACCA 335721 33 97.0 34 A................................ TGCGCGGTGATCGGTTTCATGATCTGGTCGCTGG 335654 33 93.9 34 C............T................... AGGTCCGTCACCAGCATCGAGCCCTCATGCGCAA 335587 33 75.8 0 .C.......G.........C........ATCCG | ========== ====== ====== ====== ================================= ================================== ================== 4 33 91.7 34 GGTCGCCTCCCTCGCGGAGGCGTGGATCGAAAC # Left flank : TAGGGTTTGACGTATTGCGGCGGAATGAGCCGAACATCATGTCCAAGAATAACCAGCTCACGAGCCCAGTGATGGGCGCTGGAGCATGCTTCCATCGCGATCAGGCAAGGAGGCAGCTTGGCGAAATATGCAAGCAACTCACTTCGTCCAAGGCGACGGCGCAGAACGGTTTGACCGGCCTCATCAACGCCGTGCGCTTGAAAGATTGTTTTTGCAAGGTCGAGACCAACGGTAACAACAGGCATGGAAACGCTCCTTCTGGCTAAAAGACACCGCCATATTCGCCGAGGGGAAGGGAGCGGTCCATGCCATCAAGTGGGCTGTCCAACGGTCCCGCTACATGACGCTGGAAACCATCGCCACGATGAGCGATGATCCGCTCATCAACTTGCCAGCAGCAAGCTGACACTCATCCGGCCCTCTGGGATGAGCCGTGGTCGTCTAACCTACACCACGTCCTGGGACACGATCCACCGCCCGAAATCTTGGCAATAGCGCCC # Right flank : TCCAACAGCGGTCTCCGCCCCAGGTCGGCGAACGCTCGGTTCCATCGTCACAAAATTGTGTTCTTCCATCCACAGCGGCGCGCTCCATCTACCAGGGCGGGAACAGGTCATTTGGCGCACGAGGACAGCGGTTTTGGTCGCATTGATAAAATTTGTCCATGTGGCTTCAATCTGCCTCTGGGCTGCCGGTCTCGTGAGCTTGCCGGGCCTTTATGTCCAGCGCTCAACGGTCGCGAACCGAGATGCCCTCCACCGCCTGCAGAAGATCGTCCGTTTTTCGTATGTGAATGTCATTTCGCCTGCCGCCTTCATCGCGGTCCTCAGCGGCATCGTGCTGATCTTCCTGCGCCAGGTTTATGCCCCTTGGTTCTCCGTCAAGCTGTTGTTCGTTGCGTCACTGGTGATCCTGCACGTCCTGACGGGACTGGTGATTATTCGGATCTTTCGTGAGGGCGAGGGCTATCCGGTCTGGCGGTTTCTAGTGGCGACCATCGTGACGT # Questionable array : NO Score: 3.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCGCCTCCCTCGCGGAGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 409317-409149 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049244.1 Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 409316 33 100.0 36 ................................. GATTGCTTGGACGGCTCTCCTGTCGTCGATCTCGAA 409247 33 97.0 33 A................................ TTCGTTGGAAATGGTGGCGGGTCGCTGGAGAAA 409181 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 3 33 99.0 35 CGTCGCCTCCCTCGCGGAGGCGTGGATCGAAAC # Left flank : GCGACTGGCCGCCTCTGCAAGATCTGATCCCGGATTTTTGGGAACGTTTTGAGGCGCACATGGCTGGCCTTTCCGGCCGGTCCGGGACATCCGGCAAGGGCGGTGCACTGAATGATCTGCGTGCCCACATCCTGTCGCACGTGCGCAGCAAGGCGACCGCCCGGCCCGGCCTGTTCACCCTGACCGTGCCAACTGGCGGCGGCAAGACGCTCGCCTCGCTCGGCTTTGCGCTGGATCATGCCAAAGCCCATGGTCATCAACGCATCATCTACGCCATTCCCTTTACCTCGATCATCGACCAGGCAGCCGCCATCTTCCGCAGTGTCCTGGGCGACGAGCATGTGCTGGAACATCACTCGAATATTGACGAGGAGAAGTTTCAAGCGCGGGAGCGGCGCGACAAGCTGAAGCTGGCGATGGAGGATTGGGCGGCTCCGGTCATCGTCACCACGAATGTGCAACTGTTCGAGAGCCTGTTCTCCGCCCGACCGTCCCGCACC # Right flank : GATGTGTATGGACCGCTCCCGGTTTGCAAGGAGTAATTTGAACGTCACGGCAGAGACGGTGCTTGCGGTCGTGTATCCGGCCTGTTTATGCGAGCCGCTCGGCCGCTTGTGTTTCGGCGTGCAAAATTGACCCCATTAGCGGGGTAATCGGCGTCCAATTTTGACCCCCTTCGGATTTATCTGACCATCCGTCTTTTGACGGCGGATGGAGAGGGAGTTGAAGCGAGTGGATACGATTGCGCGCGTCCGGCGGGCCTTTCATGTTCAAGGCTGGTCGATGAAGAAGATCGCCCGCGAACTGCATGTTTCCCGCAACACGGTCCGCAAGATATTGCGCACCGATGAGACCGACTTCTCTTACGAGCGCGAGCGGCAACCTTTGCCGAAGACAGGGGCCTGGAAGGCGGAGATCGAGCAGTTTCTCGTGACGAACGAAGGCAGGCCATCGCGCGAACGGCTGACGCTGATCCGGATTTACGAGGAGCTGCGGGCGCTCGGAT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCGCCTCCCTCGCGGAGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //