Array 1 191-682 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPRH01000053.1 Staphylococcus lutrae strain DSM 10244 b6cdc699-46a7-418c-8c45-81afb8e60974_c53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 191 36 100.0 29 .................................... AAAGATACGGGACGTCTCATTGTCGATGT 256 36 100.0 29 .................................... GCTTCTGATTCGATAATTTGCGTGTTAAA 321 36 100.0 29 .................................... TCAAAAACTTGATGCAGGTGAATATGGAT 386 36 100.0 30 .................................... TGGTTCGTAAATATCCCACAGATAATGTTC 452 36 100.0 30 .................................... AATGAATGAGTATCCTCACAAAATCGAAGT 518 36 100.0 30 .................................... ATGTATAATTTAATTGCTTCCTTATCTTTA 584 36 100.0 29 .................................... GAAAACAATTTAATCAATGTGGAAGCATT 649 34 83.3 0 .......................-...-TC..G..T | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 97.9 30 GTTTTAGTACTATGATTTTTTAGAAAGAAGTAAAAC # Left flank : TTATAGGGGATAATTTATTAGAACTTGGACAGTATTTTAAGTTTATCAATCAATATGAATGAGTTATAATTACGGTGTAAAACGTATTATCTCGCGAAGTCAATGGTATGTTCAACTAGGAAGAAACTGATTTTCGAATGGTTTTACTTTAATTATAGTAGTAGAATCGCATTGATTTTTTATATTTGAGG # Right flank : TTTTATGCTATAGGTTTCATGATTTGAAAGGCATTTATTCATATTTTTCAAGAAATAATGTTTCATAGATATACCCAGAGTAGGGGTGTGAGGTTTACTGCTTATACTACTGGTCTTATAATCAAATTCCCGGTGACATGCGAAATATGTCGCCTTTTAATATTGTTTGAATTTTTATCCTTTGTTTGCTTTTTATTCGATGAATGTATTTCATTTCACACCTTTTACATCGAATCCATCGGAATTTTGTTTACATTATGGTGATTTTCGTGTGCAACAGATATCTTTAAGGAAACAGTCGTAATCAATTTTAATACGTTAAAATAACAAATTTTATAATACATATGGATTGAACAAAGTCCAATGTTTTTTCCTGTAAATTGGTATGACACACCAAACGAGTGATTATGGAAAATGGAAGGGATAGGAAGGTCCATGATATAATAGGCTCAAATATATGCAGAATGAACGAATATAGAGAAAGTAGGGAGCGTATGAAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTATGATTTTTTAGAAAGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.78%AT] # Reference repeat match prediction: F [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 45909-45344 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPRH01000026.1 Staphylococcus lutrae strain DSM 10244 b6cdc699-46a7-418c-8c45-81afb8e60974_c26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 45908 36 100.0 30 .................................... TCAGCTTGTGCATCTTCTTTTAATTGTTTA 45842 36 100.0 30 .................................... ATTCGTTATCATTCGGAAAGATAAAACCGA 45776 36 100.0 30 .................................... AAAAAAGTTTTATCAATCCGCAGCTTAGTT 45710 36 100.0 30 .................................... ACAAAGTGTATGCACTGTGCTATACTTAAT 45644 36 100.0 30 .................................... AGGAGTTAGAGAATACTTTCGACAACTGGC 45578 36 100.0 30 .................................... ACTCCACGCACCTGAGGGGCTTTCGTCTCT 45512 36 100.0 30 .................................... ATAGTGATGTTGGCGAGCCTAAATTAATTT 45446 36 100.0 31 .................................... AATAATCAAAACTCGATAAAAAAACTTTAAA 45379 36 94.4 0 .............T...............A...... | ========== ====== ====== ====== ==================================== =============================== ================== 9 36 99.4 30 GTTTTAGTACTCTGTTATTTTAGGTATAAGTGATAC # Left flank : TTGGAACATGTGCAGGTCTCATTGTCCTTGCGAAAGATATTGTTGGAGAAGAAGGTTATCTTCAAAAACTAGATATCACCGTAGAGCGAAATTCATTCGGTCGTCAAGTGGATAGTTTTGAAGCTGAACTCGATATCAAAGGTATAGACCAACCTATTGAAGGTGTATTTATTCGTGCCCCTCATATCCAATCGGTTGAATCTGCAGTTGAAATACTTGGAGAAATTGATGGAAAAATCATCGCTGTACAACAAGGCCGTTATTTAGGTGTCTCTTTCCACCCTGAATTAACAGATGATTATCGTATCACACAATATTTTATTGAGCACGTCATGACACACGCATAAAGATAAAACATGCCGATGATGTAAGGAATCACGCCACTTCAACATTAGTGATTCAGTACGGAGGCATGTTTTTTTGATTACAACCTATAATTTATTGTGCACTTTTAAAAATGAGTGGCAATGTGAATGGAATATAGTATAATGTATCTAGAG # Right flank : ATGAATGGTTTTAATATAATGACGATTTGAACCGTGAGTGATACGTTGAGGGGCTTCCTTAATTATCAAAATCGGTTTTTGAACTATGTTGTTTCTGATGTGTGAAACAATGTTCAAAAAAGGCTTGCCATACACTTAATATGTGGTACAATATAATTGTGAGTACTGAAGTGTACTTATACCTAAAATGACAGAACCTACTAAAACAAGACAATATGTCGTGTTTATCCCGCTAATCTATTAGTGGGATTTTTCTATATCAAATGTGAGCGGAGTAGGTTTGGATGAAATGGGAGGGACATGTATGCGTAATAGTTATATATTGGGTCTGGATATCGGTATTACTTCTGTTGGTTATGGCATCATTGATCGTGTCACAAGAGAGGTTATCGATGCAGGTGTCCGTTTATTTCCAGAGGCCAATGTTGAAAATAATGAAGGACGAAGAAGCAAAAGAGGGGCGCGTCGTTTAAAAAGAAGACGAATTCATCGCTTAAATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTTATTTTAGGTATAAGTGATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //