Array 1 3710-285 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMDT01000018.1 Enterococcus alcedinis strain CCM 8433 sequence18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 3709 33 100.0 36 ................................. CAGTTGCAGTAGGTGCTGGTGTCGGTGTGATGGCTG 3640 33 100.0 36 ................................. AGATAGCGCTAGCGACAGTGACGCTCAAAATAGCAG 3571 33 100.0 37 ................................. GCGTGTTTTAGGTATCATTGGCAAAGGATTAGAGAGC 3501 33 100.0 35 ................................. ACTGAAGGAGACCGAGAAGATATCAGTATTATTAA 3433 33 100.0 34 ................................. CCACAGTCCATCAGTTTACCGCTAGCCAAGTTAA 3366 33 100.0 36 ................................. TTTTTATTTTGTCTCATCGAGGAACATTGTGTCTCA 3297 33 100.0 34 ................................. AAAGAGGGCGAAATCGTTCGAGTTTATACCGAAA 3230 33 100.0 35 ................................. CTGCAAAAGAAGCACCTCTTTTGCCAAGAAAATCA 3162 33 100.0 37 ................................. AATTTTTTGAATGTGACTCTAGGTCACATTTGTCTAT 3092 33 100.0 37 ................................. TGCGTTTAATACGCTTGCTGAAGAAGATGATAGTTAT 3022 33 100.0 35 ................................. TTTGACGGGTACGCATACGTTAGCAAAAGATGCTG 2954 33 100.0 33 ................................. TTCGGTAATTAGTTCATCATAAGTCTTAACAGC 2888 33 100.0 35 ................................. CTTCGATAGTTTTCCCGGTATACTCTACAACGTAT 2820 33 100.0 35 ................................. TATTCGTAAAGTCGAAAGATCATCATTTACTGAAG 2752 33 100.0 34 ................................. GTACTTTGGACCATTTTTCGGCGGTATCAAAACA 2685 33 100.0 34 ................................. CGAAAAAGGTGACTCGCTACGTCTGGATGATAGC 2618 33 100.0 36 ................................. ATTTTTCCTGAGGGATCATATATTACAGCGCTAGAA 2549 33 100.0 35 ................................. GGTTTAACTCTCTTTACAGGACGTCAAGGAGCCGG 2481 33 100.0 37 ................................. TTATAGATATAGTTTGTCTGGTGATGGCTTTAAGTTT 2411 33 100.0 35 ................................. CGTTAAGTTAATTACAGGAGATAAAGGCTTAGGTG 2343 33 100.0 34 ................................. AATCCGATAGCGCACAGCCAAGTAGATAATGTGC 2276 33 100.0 35 ................................. AAATTGATATTGTTTGTAGTCTGACACGTCCATAC 2208 33 100.0 34 ................................. AGCTATAGGGGGTAACACGTTTGCGAATTAGTAT 2141 33 100.0 35 ................................. CTTTCATCGGATGAGCTATCACTGGAAACTTTAGA 2073 33 100.0 35 ................................. CGGACACTGAGTTTAACGATGCCAATGATTTAATT 2005 33 100.0 34 ................................. TTACCGATCCGACAGGTAACACGCGCTACAAAGT 1938 33 100.0 36 ................................. CGTTACCTCCAATCTAAGACCGACGATGACCCCACC 1869 33 100.0 37 ................................. GGGACCGGTGAGTTTGCCGAAAACGGTCAAGGTCGCA 1799 33 100.0 34 ................................. TCAAAAATTATGCGTTACTTTGTGATTAGTTATT 1732 33 100.0 38 ................................. ATGGTGTGCCTGCCCGTGATCGACGATGCCAATTTTAA 1661 33 100.0 36 ................................. CTTTTTAGTTACGTAAGTCTCAATATCATGACCCTC 1592 33 100.0 35 ................................. GGGATTTGATTTAAATAACTTAACTACTACTGGTT 1524 33 100.0 34 ................................. TCTCTCAAATAATATTTATCGAAAGCACCTGGAC 1457 33 100.0 36 ................................. TGTGTAAGTTAGTCCTGCGCCTGAAGGATCGATAGG 1388 33 100.0 35 ................................. AATCATGTAATCACCACTTGTCACACCTTCTGTGA 1320 33 100.0 35 ................................. AGACGGGGACATCGAGTGCTGGGGGAGCAAGCGTG 1252 33 100.0 35 ................................. CCCATATCTACAATGCACCAGTTAAATTGCATTGC 1184 33 100.0 34 ................................. TCCTCCTTTAACACTGTGAACATGCTCTTGATAA 1117 33 100.0 35 ................................. ACAACCGTGTCTTCCTTGTATATATGCCAAACGTT 1049 33 100.0 34 ................................. AATTTAATGGCATTGTCACACCGATTTTAGGGAT 982 33 100.0 35 ................................. AGCGAGAAAATGCCCTAGCTCATGCGCTAACTCAA 914 33 100.0 34 ................................. TTAACGAGCTAAAGCTCTTAAATGAGCAATTAAA 847 33 100.0 34 ................................. CCTCAAAGCTTTTGAAACGCGCGTAAACACCTGT 780 33 100.0 36 ................................. AATATGCGTCATATGATAAAAGGAACGCCATTGGAT 711 33 100.0 36 ................................. TCACATCACAATAAACAACAATAAAATAATTACAAC 642 33 100.0 12 ................................. ATCATATTCAGT Deletion [598] 597 33 90.9 36 T...A.....A...................... AGCGCTCGCTCCTGAAGCGAGAAAGAAAGCTCGACA CAATTTGTGA [577] 518 33 100.0 33 ................................. CTTTAGGGATAGTTAGGGATAGTAGAGAGTAAG 452 33 100.0 33 ................................. AATTAGTGGTTTGCTTGCTTCCAGTCCGTCTCG 386 33 100.0 34 ................................. TTACAACAGACAAATGGTTTATCACACATATGAA 319 33 90.9 0 ..T....................CA........ | CA [296] ========== ====== ====== ====== ================================= ====================================== ================== 51 33 99.6 35 GTCTCAACCTGTTTAGGTTGAGTGGATTGAAAT # Left flank : CCCTCCATTTTTGTGGAAGTAGGTGATGATCGATGTTAATATTAGTATCATATGATGTTGCTACTTCGACTGAGGGTGGAACAAAGAGATTACGAAAAGTAGCAAAAATTTGTCAAAATTATGGACAAAGAGTTCAGAATTCCGTTTTTGAGTGTATTGTAGATTCTACACAATATGAAGTAATGAAAAATGAATTAACCACCGTGATTAATAGTGAAGTTGATAGTTTAAGATTTTATCGTTTAGGGAAAAACTATAAAAGTAAAGTTAAGCATATTGGAGCAAAACCATCAATTGATATCGAAGGAACATTAATTTTTTAAGTGCGAATGTGAAGTGAACACAAAATCACTAGTACATTCGCACCAAAATAAACAGTTAAGTTAAAATTAAATGAGGGAATTAAGTATAAAATGATTGTTTTTTCAAAAAAATAATCATTTTAGGCGATTTTCATTGAAAAGAAGGGAGTTTTAAATAAAATTCCACTCTGAATCGCC # Right flank : TAACTTGGTTTAGTCATACGCTGGGGGAAATTCATCGTCTGTACACCAAAATTGAGATGAGAAAAAGGACATTATGAGATATGTTTTAGCGCCGTGTGGAACTTGAATGTCATCAAAACATATAGATCCAACTCCTACCGCCTCCATTGAGATCAATATTGATATGGAAAGGAATGAGAAGGGAAGAGACGTGCAGAGACGATTTTTTTATAACTCTTGAATTTACAATATAAGTGCAACACCAAAAGAGACTCATTGCTTCAAACCTAGTAAAATAGTGTTTAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAACCTGTTTAGGTTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.30,-3.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 8301-7251 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMDT01000019.1 Enterococcus alcedinis strain CCM 8433 sequence19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 8300 33 100.0 37 ................................. CGTGGATTAGTTGAAGAGGGACGTAATCGCATGACAA 8230 33 100.0 34 ................................. ATCTAAATGAAGCAGCGAAGAAACAAAGTTATCC 8163 33 100.0 35 ................................. CGAATCCCAGAGGAGCAAATGGCGAATGCATTTAA 8095 33 100.0 35 ................................. AGATCCAAAAGAGTTCGATGCGATTATCAAGGTGA 8027 33 100.0 34 ................................. GTTGTAGAAAAGTTATTAAAATCTTTGCGATGCA 7960 33 100.0 34 ................................. ACTACAGGGGGTAACACGTTTGCGAATTAGTATA 7893 33 100.0 33 ................................. TTTTTTACGGCAATGACACATCGATTTATGACC 7827 33 100.0 34 ................................. GAAGAGATCATGCGCGAACAAATTTTTCATATTT 7760 33 100.0 34 ................................. AATGAAATTGATGAAGCGATCGATACAATCATCG 7693 33 100.0 34 ................................. AATCAAAATTTTCTCTTCCGTTAACTCTGAAATT 7626 33 100.0 36 ................................. AATGTTTAAAGCACCCAAGTTTACCAATGATGAATC 7557 33 100.0 36 ................................. AACCCCATTAACTTCTCTTTAGAAGCAGTTAGCTTT 7488 33 100.0 34 ................................. GATGATACCCTTAGCGATAGCATCTAAGTTTTTA 7421 33 100.0 36 ................................. TGAAACCACATAAGTTCCATCTGGTTCATAGTGCCC 7352 33 100.0 36 ................................. GCTGAAGTTCCAGAAGGCGTTGTAGAAGCGACTATC 7283 33 93.9 0 .....................A..A........ | ========== ====== ====== ====== ================================= ===================================== ================== 16 33 99.6 35 GTCTCAACCTGTTTAGGTTGAGTGGATTGAAAT # Left flank : CGAACAACCATCATTATTTGCTTTACTTGTTTAAGTATTATAAATGGAAGTATTTACTTTTAAAATAGATACTTCCGTTTTTACGTTAAGAAAGTATAAAAGATAGAGCGGTAGAAAGACTGAATTGACAGTCAATCTATCGCTTTTCATTTGATTTGAAAATAAAGCTATGAAAATGAATATTCTTTGCCCGTTTACAGGTATCGTATCATTTTTCTCATAAGATTTACTCGTTTTGAAAGAGTATATCGTTAGCTAATGCTTAATTATTTTGTGGTATACTAGATGTGTAAATAACTCTTGTGGCAGTAATATGTATCTAGTGCGAATGGTAAGTGAACAGCCAAATACTGGCTCCTTCGCACCCTGTTTGCGGTGTTAAATGAAAAAATGATGATAAAATAAAGTATGGATTGATTGTTACAACCTCTTAAATAATCAATCCAGGCGATTTTCATTGAAAATACACGGATTTATTTGAATTATTCGTGTAAATCGCC # Right flank : TTTAGGTAACATCATGGAGTTAATTGTTCAGCTGGACAATGATTGATATCGGTATGAATTTTGGCGCCAACTAATCTTTAAGGTAAAAAAAACCACCAATCCATCAATTGGTGGTTTTTTAGGTTGTTTTTCTAATTTTTTTATCTAAAAAACCAATCAAACAACGCTTGGTTTGGTCTATAAATGAGGGCTATGTTATAATCAAGTCAGATGACGAAGGTTGGTGAGGGCGATGCAAATTCGATATCAAAAGGCGCAACAAGAAACGCTTGTAACTTATGGCGAAATCTTGTCAACGAGTATTCGAGAAGATTGGCTGAAAGACAAACATCTAATTATTTTAACGAATCAACGTTACTATGACCGTTTTTTTGAAAAGATTGAACAATTATTTTTAAATCATCCAGTTGACTGGTATATCTTTCGAAATCAATTGTACGTCAATACATTAGAAGAATGGTCGGGGTTACTGACTTATTTAGATCGCTTTTCAACGGAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAACCTGTTTAGGTTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.30,-3.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //