Array 1 459531-460656 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDSK01000001.1 Salmonella enterica subsp. enterica serovar Braenderup strain 56 NODE_1_length_650363_cov_29.3988, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 459531 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 459592 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 459653 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 459714 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 459775 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 459836 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 459897 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 459958 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 460019 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 460080 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 460141 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 460202 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 460263 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 460324 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 460385 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 460446 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 460507 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 460568 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 460629 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 476915-479021 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDSK01000001.1 Salmonella enterica subsp. enterica serovar Braenderup strain 56 NODE_1_length_650363_cov_29.3988, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 476915 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 476976 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 477037 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 477098 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 477160 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 477221 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 477282 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 477343 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 477404 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 477465 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 477526 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 477587 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 477648 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 477709 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 477770 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 477831 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 477893 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 477954 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 478016 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 478077 29 96.6 32 ............................T TTACGCAATATTAACAGACCAGGGAGCAGCGC 478138 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 478199 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 478260 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 478321 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 478382 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 478443 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 478504 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 478565 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 478626 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 478687 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 478748 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 478809 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 478870 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 478931 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 478992 29 89.7 0 A...........TC............... | A [479018] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //