Array 1 294-3444 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMHU010000155.1 Serratia marcescens isolate MGYG-HGUT-02350, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 294 28 100.0 32 ............................ ACGATGCCGTCGGTGTTCGCCGAAACGACGCT 354 28 100.0 32 ............................ TGTGCGCAGATCCCTAACTGGATTTATGACGG 414 28 100.0 32 ............................ GGCGGCCGTCAGCTGCCCGTCGCTGCTTGCGC 474 28 100.0 32 ............................ GTCCCCCTGCCAGGCACTCATGAGTCGACAGC 534 28 100.0 32 ............................ AAAATCAGCCCAGATTGTTGCATATCAGGCAC 594 28 100.0 32 ............................ TGCCAGCGTCACGGCGGGCTTCGACCTGTGCG 654 28 100.0 32 ............................ AACGAGGGTAAATTCGTCGCCAAAATGAAGCA 714 28 100.0 32 ............................ TTTCACTGCGCCGCCCTTCACGCCCCGGATGG 774 28 100.0 32 ............................ TATGGCTATCTCAACGATCCAAACTTCTTGCC 834 28 100.0 32 ............................ AGAAAGCCGGAGAGCTGGCCGACGATCAGGAC 894 28 100.0 32 ............................ ACTCTATGCGGCAAACCTCACCGACCCGCATG 954 28 100.0 32 ............................ TTTGCTCCAGGCAGCTCCAGGTGCATGCGTCA 1014 28 100.0 32 ............................ ACAGATGCGTTATATGGGAACCCGTTCGCGGT 1074 28 100.0 32 ............................ TGATTCACAGCGGGCAAAATGCTGTCGGGTGC 1134 28 100.0 32 ............................ GCGAACAAATAACCTACGTTTCCAGGATTGAT 1194 28 100.0 32 ............................ AGTTATCGATTGCCGAGCGCGCCGCCTTTGGT 1254 28 100.0 32 ............................ CCACTGAGCAAAGCGTGGGTCATTGACGTAAT 1314 28 100.0 32 ............................ TTCACAATCTTTCCTTTCTCGTCGCGGTGATA 1374 28 100.0 32 ............................ TGCCGTATCGATGTCGGTCAGCACCACCCGCC 1434 28 100.0 32 ............................ TGTCCGAGGGTATCGATTGCACCCGAGAGGGA 1494 28 100.0 32 ............................ TTACTGGCCTTCTCCAGTCTTTGAGCCTTTTC 1554 28 100.0 32 ............................ AGCGCGTCGCGGACGTGATGACCAAAGGTTTC 1614 28 100.0 33 ............................ ATGCTCATTTTCGCGGGCAAACGGCGCAAATCG 1675 28 100.0 32 ............................ GATCAGCGGTAGGGATGAAATCGCCCGTTCCG 1735 28 100.0 32 ............................ AGTAAGTGGCTTTGGTAGGTGGTGCGATTAAC 1795 28 100.0 32 ............................ GACGTCGGCGCGGATTTCGGCATGGAGGCGCC 1855 28 100.0 32 ............................ ATCAGGGGCATGCAACATGGCAGAGGATAAAC 1915 28 100.0 32 ............................ ATAGTTACCCCTTGCCGAGTTAGAAAATGACC 1975 28 92.9 31 .......................GA... TGTTTTTTTTCTCAAACCCCTGAGCGGCTTT 2034 28 100.0 32 ............................ TGGAACGCAGTAGTGCGGGGGTCAAATACGAT 2094 28 100.0 32 ............................ GGACTTCAGCCTGTGCTAAGAGCGTGACGAGC 2154 28 100.0 32 ............................ TCCTGAGGTGTTTGACCGCGTCTTCGGATTTG 2214 28 100.0 32 ............................ TACGCCACCGCCTGCAGCGGCTCCTGCCGATA 2274 28 100.0 32 ............................ TGTATCGAACATCGTCAATGTGACGGTAAATA 2334 28 100.0 32 ............................ GAAACTTCGCCATTCCATCCGGCGCCGTCGGT 2394 28 100.0 32 ............................ AATGATAATTTCTGCCGTGCCGGCATCCTCTG 2454 28 100.0 32 ............................ AGGGAATCGGTTGATATCGCGCTGGTACGCCA 2514 28 100.0 32 ............................ AGCGACCGGGAACCCGTTCGCGATCGAAACCC 2574 28 100.0 32 ............................ ATAGGGATCGTGGCGCGCGTCACCAGCTGATA 2634 28 100.0 32 ............................ TTGGGGTGACGGCTACGCCGGGACGCGCTGAC 2694 28 100.0 32 ............................ GTGCAGACAGCACTGGCACGATCACGTTAACC 2754 28 100.0 32 ............................ ATCATGGAAAGCCTTTATTCTAAAAAGAAATA 2814 28 100.0 32 ............................ TCGGCCTGTTCCCACGTCAGCAACCATGTGAA 2874 28 100.0 32 ............................ TAAGCAGCAAAATAAACCTCAACAGTCGAATG 2934 28 100.0 32 ............................ GATGGATACCATTGCCAATCAGGTGGCCAGCA 2994 28 100.0 32 ............................ TGGCGAACGTGGACTATTACGGCGACGCCGCT 3054 28 100.0 32 ............................ ACAAAACCTATTTCAGCCGGACGCTGCGCGAA 3114 28 100.0 32 ............................ ATCGGCCGAGCGGGCGTGAAAACGGTAGGAAC 3174 28 100.0 32 ............................ GATAAGGATAAGGCTCGACGCCGTGCAGCCGC 3234 28 100.0 32 ............................ ATTACTGAACACCCACCAGCGGAGCAGTCAAA 3294 28 100.0 32 ............................ TTCGCTTCCAGCTCTGCCAGTAGTTCGAGAAC 3354 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 3414 28 96.4 0 ....................A....... | A,A,G [3434,3437,3440] ========== ====== ====== ====== ============================ ================================= ================== 53 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGGTCATCAGTGGTGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGGTTGCCGAACCCTTTTTTGAGTGATACTTTTAATTTATTGATTTTAAATCATATTTTTAATCGCTTTAAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACGG # Right flank : AAAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGCCTGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11926-13032 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABMHU010000155.1 Serratia marcescens isolate MGYG-HGUT-02350, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11926 28 100.0 32 ............................ ATACAGTCGGAGATCAACCCGGCGGCGAACGG 11986 28 100.0 32 ............................ ATAACTGACGCTTAGCGGGTCAGTCTTCCACC 12046 28 100.0 32 ............................ TCAGTGTTGCCGGTGCCGCTTGCTGCCGCCAG 12106 28 100.0 32 ............................ TGATGGCTCAAGCAATGAGCATAAAGGTTGGC 12166 28 100.0 32 ............................ ATGATCGGCCCGCTGCCCAAGCGCATGCGCGC 12226 28 100.0 32 ............................ ATAGCGCAGTCCTTCACGCGATTAGCGTATGC 12286 28 100.0 32 ............................ GTATGCACTGTGGACTCCAGGTCATCGAGGCT 12346 28 100.0 32 ............................ AGAAAGGCATTCCGCCCTGGAAGATTCACCAC 12406 28 100.0 32 ............................ ATTCGGACGCGCTGCTGAGCGCCCAGGCGAGA 12466 28 100.0 32 ............................ AATAGGTTGGCTCGTAAAAGTGAATCGTGTCC 12526 28 100.0 32 ............................ CGGGTGCGTGGGCGCCCATCATTAGCTAAAAC 12586 28 100.0 32 ............................ TGGCACCGATTGGCAGGATATTACCGGCACGT 12646 28 100.0 32 ............................ ACGAGCATGGATAGTCGGGTGCGCGTGTTCGT 12706 28 96.4 32 ..........................G. GCCCCGCCAGCGCCAGCAGTGCCGGATGACTA 12766 28 100.0 32 ............................ TGGCTAATGACCCAACTTACAGCACGGCAAGC 12826 28 100.0 32 ............................ AGGGAAATCCAGGCCGATGAGGAAACGCGCAC 12886 28 100.0 32 ............................ ACGGAGGTGGCCGGCAGCTTGATGGAGAAGAT 12946 28 100.0 32 ............................ TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 13006 27 82.1 0 .........T...C.A....-..T.... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTTATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGGCTATTTTGCTCA # Right flank : ATAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAGCGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGTCGATGGCGCCCCACATCAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //