Array 1 16418-14648 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKZW010000020.1 Streptomyces mesophilus strain YC504 YC504_contig_20_length_55628_coverage_67.8_0.90, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 16417 28 93.1 32 ....-......A................. CCTGGCTGGTCACCCGCCCCAAGGAGCGTCTT 16357 29 96.6 32 ...............A............. AACATCGTGGCGTCCTTCTGGATCGCCGCGTC 16296 29 93.1 32 .......G....................T GCATGGCGGACACACGGTACTGACATCAACGG 16235 29 96.6 32 .............A............... AGCCTGTCCGGCCTCGAAATCAAGGACGCGGA 16174 28 96.6 32 ....-........................ TTCGCGACGCTCTTCCGCCTGGGGTACATTCC 16114 29 96.6 32 ............................C TCGAGCGGCACCACGACCTGGACTCTTTCCCA 16053 29 100.0 32 ............................. CGTCCGGATCCTCCGACCCCCGTGGCCCGACC 15992 29 100.0 32 ............................. TTCGTAGAGGGCGTGAAGGAGGGCGAGTTCGA 15931 28 89.7 32 ..T.-.......................T GCGTGCTCCCCTTCGTGCCCGGCTGCACTGCG 15871 29 100.0 33 ............................. GACCTGCGTACGCGTCTCGGCAAGGACGCCGAC 15809 29 100.0 32 ............................. TCGGCGCCCTGCTGGGCAGCTACGTCCGCGGC 15748 29 89.7 32 C.............C.............A TGCACGGTCAACCGGTAGGGTGCGCTATGGGC 15687 29 96.6 32 ........T.................... AAGCCGCCATCGAACTCGCCGCCTCCGCCCCC 15626 29 96.6 33 .....T....................... GAACTCCTGCACCTGTGCAGCACCGACACCGAC 15564 28 96.6 32 ....-........................ CAGGCCGTGCGCGAGGTGTGGGCCGGGTGCAC 15504 29 96.6 32 ........T.................... AACTGGAACATGTCGTCCAGGCGGCGGAAGAC 15443 29 96.6 15 ........T.................... TGGGAAGAGGTCCAC Deletion [15400] 15399 29 100.0 32 ............................. GAGCAGGTGACCGACCGGGAGTTGGTGAAGGA 15338 29 96.6 32 ..T.......................... GCCAAGTCCGGGAGGGTGGTGGTGCTGCGATG 15277 29 96.6 35 ..T.......................... CAGGACACCGCCGACTTCCGGGCCCATGACGGGTT 15213 29 93.1 32 .C.C......................... GCGTCCACGGTGAGCAGTCCGCCGAGCGCGAC 15152 29 93.1 33 ...........C.T............... GAACGGTCGTACGCGAGTGGACCAGCCTGTCCA 15090 29 86.2 32 ........TT..............C...C TGCGCGCAGCCCTTGCTCGGCTCGTACGTCAA 15029 28 79.3 93 ..T.-...T.......T......CT.... GTCATCAACCTGGGCTCGAACAACTACCGCGGGTGGCCCGCGCGCCGGTGGGGTTCTCTTCCCGGTACCTCCCCCCCGGGAGGTACCTCCGCC 14908 28 72.4 31 AG.TG.....-..........G.CT.... CTTCTCGGCAAGTCCCTTTCGTCCGGTCCCT 14849 29 72.4 86 .GT.G.....T...C.......GCA.... GACGACAACGAGCCCTTCCCGATCGCTGATGCGTTGCCGCGTGACTGGGGCCCGTACGCGTCGAACGCCGCGGCCTGACGGTGCAG 14734 28 93.1 30 ....-................T....... CGACCACGCGGTCGTCCTGGGGCCCTTTTG 14676 29 69.0 0 TGTCG......AA.C.........T.... | ========== ====== ====== ====== ============================= ============================================================================================= ================== 28 29 92.4 36 GTCGCCCCCGCGCCTGCGGGGATGGTCCG # Left flank : CTACACCGCATCGCTGACCGCGCCTCCAGCGTCTACGTCGAACGCAGCCACCTGGACCGCGACGAGAACGCCGTCGTCATCATCAACAAACAGCAGACCGTCCGAGTCCCCGCCGCCATGGTGGCGGTCATGCTCCTCGGCCCAGGCACCCGCGTCACCCACGGTGCCATCCGCCTGCTCGCCGACTCTGGCGCCACCATGTGCTGGGGACTCCGAGGACACCGCACACGCAGGATGGTCGAAGCAAGCCCAGGCGTGTTCGTCGACAACCCCAACCGCCGTGTCCGAGACCGGCTCTGGGACGTACTGGCCACCCGCATCGGCGACGGTCAAGCCATCCTCATTGAACCAGCCACCAAGCGAGCAGGGATGGGTAGTCCGCACCGCGGGCCGAAACCGCTGGCAATCCGTCGACTTCGACGGACTCATCCTCTCCGCGCGACCAAAGTCCAACCAAACGAAAACCGTCACCTCCCGCGAAAGAACCGCATCCGCTTCGT # Right flank : GACTTCCACAGAACGAGCTGTGCGAACACCACTCGCGCCGCCACGCTCCACTTCCGGCGCGCCCCAAACCCGCACCTGAGCGCACTGCGCATGGTCTGTGCATCAGGCGCAGACCAGGGGGTCAGCGCGAGTGCGCGTCTGCACCGCCGGTGGCCGACATCAATGCGTCGACGAGTGCCTCGGTCTCCGGCTCCAGGTCGGCGTGCAGCGCACGGTTCATTGTCTGCAAGCGTGTGATCGCGGTGTGCAGGCCCGGTCGGTTGCCGAGCGCGTGCTCGATGCGCATCCAATCCCGGTACAGAACCTCGGAAGTTTCCTCGGCAGTCAGGCCCACGGTGACGGCTTGTCGTGCAGCCGCCAGGTCCTGCGCAGTGCCAGGGGCCATGCGCCAGGTGGCGACGGTGTGCGCCACGTCGACGATCCGCACAGACATCTCCTGGCGCAGCGGGTCGCACCAGGGCAGCGGGTGGGAGCCGAAGGGTCGGCCGCGCACCAGTTGC # Questionable array : NO Score: 4.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:-0.36, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCGCGCCTGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCTGCGGGGATGATCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [24-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //