Array 1 1925077-1926064 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPEQ01000001.1 Paraburkholderia bonniea strain BbQS859 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1925077 28 100.0 32 ............................ CAAGAGTGACTTTATCGAGAGTCACATTTTTT 1925137 28 100.0 32 ............................ GTCCCGTTCGATCAAGATCGTTGACGAAGTGT 1925197 28 100.0 32 ............................ ACTCTCGGCACCACGCCGCGACGGGCCAGCGC 1925257 28 100.0 32 ............................ TACCTGATACGGCGCGACGCGCCTCAAAAATT 1925317 28 100.0 32 ............................ AAAATGTCATTGTAGTTTTGCACAGCGACATC 1925377 28 100.0 32 ............................ ACTGCAGAACGGGCACGGCTGAAGCGTCAAGT 1925437 28 100.0 32 ............................ AGTCGCCATTAGGCCGCGTCATAGTCAGGCTC 1925497 28 100.0 32 ............................ TTGGGCAAAAATTATCAGCGAGGTCGCCACAA 1925557 28 100.0 32 ............................ GGAACGCGCTCGCGCACGGGAACAATCGCCGG 1925617 28 96.4 32 ....A....................... AAATGTTCAGGTGACGGCATGACCGCCCTCAA 1925677 28 100.0 32 ............................ TCGACGCGGACGGGCACGCGCAAGGCCGGCAT 1925737 28 100.0 32 ............................ CGCGAAACAAAATAGTTAAACCTGCGCAGCAA 1925797 28 100.0 32 ............................ GCCGAGAAACTGCATGTCGGGCAAACTCCCGA 1925857 28 100.0 32 ............................ TTGATATGAGTGAACACGCGCGCGATGTGGTG 1925917 28 100.0 32 ............................ TCGCCTTCCCGATCCGGGTCAGTGGCAAAGTA 1925977 28 96.4 32 ...C........................ ATGTTCGGGCGGCTATGGGTCATTCGTCTTGT 1926037 28 71.4 0 A...T.......CCCAA.......A... | ========== ====== ====== ====== ============================ ================================ ================== 17 28 97.9 32 GTTTGCTGCCGCGTAGGCAGCTTAGAAA # Left flank : GTGGTGGATATTTTATTCATTTTAGTTAGATTTCTATGCGGCGTTATTTATTAAATGAAATGTGACAGGGATAAAACACGGGGGATGCTGCTCTCGCCGTGTTATCGGGCTGTGCGGCCGCTGTTGCATGATCCGGTGGGCTGACGCATCAGGTTCGGCCCGACGTGATCCATGTCAGTGTTACTCAACGCTCTGAGCTCCTGATTTGCACGGTAGAACCCTGGTTGGATGTGTCTGTTGTTTGTTGTCGGCTGTCGGATCTAGCTTGGTCGCTATCGGATGCCTCGGCAGCAGGTAGACGCCGCGAGCGGCGATGGCATGCGCCTCCACAGCAACTGGTGGATCTATCGGCGTACGGTCTTTGAGTTACACCCTTTTTCTGGGAGGCTTTTTATTTCTTTTTAAATCAATGGGTTAAGGAAGAGGGAATAATTTGGAGAATGCTTGCCTGCAGATGGGGTTTTTGAGGAGAATCAAGGCCTTGTGGTTTGAATTGGCTA # Right flank : ATACGAAAAAACCACGCTCACTCCCCCGGCAGCATCTACAAGCCCCCCATACCAACCCCCAACCCCGCGAGCCCCATTACCTACACCAGCACACACAACTCAAGGCGCTGGAACAGGTGTGATTTTGCGGATGAGATGATTCGCCTGGTCCGCCACATAAAGATTGCCATCAGCATCAATAGCCAGACCTATCGGGTTAGCAAACCTCGCTTGACCACCTACGCCATCGGTCCAGCCATGGATGTCTGCGGCCCCGGCCAGCGTCGTCACCTCCCCTGCCGCAGTAATCTTTCGAATCAAGCTGTTGCCGGTTTCCGCCACGTACAAACTACCGCTAGCGTCGAAGGCTATCGCGCCTGGATTATCGAAAGACGCCGCGGTGCCACGAGCATTGAGAGCGCCTCGCTTACCCGATCCGGCGAATGTCGAAATCTCACCGGCTGGTGTGATCTTGCGAATCTTGTTGGCCAGTTCTGAAACATACACATTGCCGCTCGCAT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3084751-3082742 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPEQ01000001.1 Paraburkholderia bonniea strain BbQS859 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3084750 28 96.4 32 ...........T................ ACTTGCAGCGCCAGCTATGCTGCCCAACAAAC 3084690 28 96.4 32 ...........T................ CCCGCCGCCGCACGCAGACAGAATCAGCAAAA 3084630 28 96.4 32 ...........T................ CACTGGTGCGCCGCCGAACTCTCAGCAGAGAG 3084570 28 96.4 31 ...........T................ GATGCGCTCCGACTCAAGCACAGAGCGGGTT 3084511 28 96.4 32 ...........T................ AGCTTCGTTGCGATCGCCACGTGGTCTGGCGA 3084451 28 100.0 32 ............................ TGTGCCATCAGGTGCCCGGCGTCGCTCGACAT 3084391 28 100.0 32 ............................ ATTAGCCTTGACCTATGGCGGCGGCGCGGGTG 3084331 28 100.0 32 ............................ TCAGTGCCGATCGTCACGCGACCAGCGCGCCT 3084271 28 100.0 32 ............................ AACCTGTCGAAGACCGGTCTATCGGTCGAAGA 3084211 28 96.4 32 ...T........................ TGGAAGGCGGGGGGACAGGCGCTCGTGGGCTA 3084151 28 96.4 33 ...T........................ CTCGCCTACAAAAGCTTTCTTAAGGCGCGATCA 3084090 28 100.0 32 ............................ GTGCGCCGGTCGCTAATCACGCAGCAGTTTAT 3084030 28 100.0 32 ............................ TTCCGGACAGTTACGCCGACGGACACAACCCC 3083970 28 100.0 32 ............................ GCGACAGCATCCGGGCTACAGATCCGCGCTGG 3083910 28 100.0 32 ............................ AGCTAGCCATATGCGGCGGCCAATTCGTCTCC 3083850 28 100.0 32 ............................ ATGATGACGACATGCAAAATCCATTTTTCATT 3083790 28 100.0 32 ............................ ATCGAGGGATCGCACGCGCCAAACATCAGCCA 3083730 28 100.0 32 ............................ TTCTCCCGATTTGCTCGAACCTGCCCCTCATT 3083670 28 100.0 32 ............................ TCGGCCCGACGCAGCAGTGCGCTGGCATCAAC 3083610 28 100.0 32 ............................ TACGTCGATGACCAGACATATCAGGCGGTCTG 3083550 28 100.0 33 ............................ AGCAGAAAAAGACATCACGCCAGCCCGGCAAAC 3083489 28 100.0 32 ............................ GTCTATCGTGTCGAAGGTGTACGGGTGCTTAT 3083429 28 96.4 32 .................A.......... ATGCGCGCGACAAAATCATCAATGCTGGCGTA 3083369 28 100.0 32 ............................ AGCACCTGGCGAGCCCGGCAGGATTGTTTGTC 3083309 28 100.0 32 ............................ TGCGCCTGCGTAAGTCCCGCACTCTTCCGCGC 3083249 28 100.0 32 ............................ AGTTAGCCATTGCGGCTCGCTGGTTCGGTTTG 3083189 28 100.0 32 ............................ CTGACTGCAACGGGAGAGGTGTAGTTGGTGGC 3083129 28 100.0 32 ............................ ATGCGCGCAGATCGTCGGATGTCATGAAAACT 3083069 28 100.0 32 ............................ GATGGCACGAGCGCAGACAATCGCGTCGAAGT 3083009 28 100.0 32 ............................ CGCCACGACATCAGACGGAGATTCCACATTGA 3082949 28 92.9 32 ............A...........A... AGTCAGCGCACGCGTATAGCTTCGCAAAAGAA 3082889 28 92.9 32 ................A.......T... CTGGAGATTGACTGATAGCCGAAGATCATTGC 3082829 28 85.7 32 ...TT....T..A............... TGCAGATTCGGGGCTAGATGCGAAAGCTATTG A [3082808] 3082768 27 71.4 0 ...TT..C..A.A...A....C..-... | ========== ====== ====== ====== ============================ ================================= ================== 34 28 97.5 32 GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Left flank : CGCAAGCGTGGCTGCAAGGCATGCGCGATCACGTGAAGCTGACCCCCGCGACGCCCGTGCCAGCGGCGGTGACGTACCGGGTGGTGCAACGGCGGCAGTTCAAGACCAATGCTGAACGCCTGCGCCGCCGCCGTATGCGACGCAAGGGCGAGACGGCTGAACAGGCCGCAGCAGCGATTCCCGACAGCATCGAACGACAGCCTGACCTGCCTTATGTACAGCTGCGTAGTGTCAGCACAGGGGGGCAGCCGTTTTGTTTGTTTGTTGAGCAACGGGAGGTGACAACTGGATCAGTGCCCGGCAAGTTCAATAGTTATGGCTTGAGCCAGGGCGCTACGGTGCCGTGGTTTTAACTGTTGGTGTTTTTTTAACCCTTTTTTTTGGCAGGGGCTGATGGCCTGTTAAATCAAGGGGTTGGAGATGGTGCTGGAATTTGGGGGAATCCGGGGTGAAAGCCGGATTTTCTTTTGGAATTAAGGGGTTGGGGGTTTTGGGGCGTA # Right flank : CCCCGAGCTGCTCCCCCTAAAGCAACCCCGAAATCCTCCTCGAAGCCTCCCTTAACTCCCCCAGATATCGTTCAATCACCACCTCAGTGGATAACGCCGATGAAAACCACGTCATGCCAATCGACGCCACCACGACGTCCTGCGCCATAACCGGAACAGCGATCGTGCGTGATACCGGGCGAACTGCTTCATCGCGGAGCGCATAACCGCGTTCACGGGTTGCATCCAGGAGTGCGTTAATGGCCTCGCTGTCCTGTGCGAGCCGGTCTTCCGAATGGGGGCTCTGGCGCAAAATTTCCAGCAGTGTCTGCCTTTCTTCCGGTGTGCAAAACGCAAGATAAGCTCGTCCCATCGCGCGGGCCACCAGGCTTAGCCGCATGTTGATCGACGAGTGCAGCAGCGATAGCGGTGAATACGGAATCGTGCTGTAGCGCACCACCAGTGCGTCAACCTCCAGCACGCCCACGGCGATAGGCCATTTGATCTGTTCGGTCAGCTTG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //