Array 1 858905-860788 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR594037.1 Streptococcus anginosus strain NCTC11064 chromosome 1 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 858905 36 100.0 30 .................................... AAAATGAAGAAAATATTGATGATATGGTTA 858971 36 100.0 30 .................................... GGTGTAACTGAAAAAGCTGCTGGTAAAGGA 859037 36 100.0 30 .................................... GCATTACGTCTGAAATAATACTTATACCTG 859103 36 100.0 30 .................................... CACAAGAGCTTCAAACGCTGCTGGCAATCG 859169 36 100.0 30 .................................... GGAAGATAATTTGGAGCATAAACTCCGTCT 859235 36 100.0 30 .................................... TACCGGCTGTAAATGTATCAATAATACTTT 859301 36 100.0 29 .................................... AAAATCACTAGAGAGTGATGTTGATTACT 859366 36 100.0 30 .................................... TTAGTCAAAGCTAATTTGTGGGGCTTACAT 859432 36 100.0 31 .................................... CTGATAAAATGAAAACGCTGTGATACTTGCT 859499 36 100.0 30 .................................... CGTTTTGTAAAAATATATCTTCGATGAGGT 859565 36 100.0 30 .................................... TATCAATATTTTTAAAATGAAAACCTTTCC 859631 36 100.0 30 .................................... GGTTTTTATATGAGGTGAAACATGGACAAT 859697 36 100.0 30 .................................... TTTGGTTTGATTTCTTCAAAATCTGTATCC 859763 36 100.0 30 .................................... TTGTGACCTTACAAAAGATTTTGGAGATGC 859829 36 100.0 30 .................................... CTTTCCGTCTCCACGATTCGTTATACTAAT 859895 36 100.0 30 .................................... AGTAAAGTTATGAAACATATCAATGCTTTA 859961 36 100.0 30 .................................... GAACTATCCAGAAAGTTTACAATGATTGTC 860027 36 100.0 30 .................................... TTTGGTTTGATTTCTTCATAATCTGTGTCG 860093 36 100.0 30 .................................... TTTGGTTTGATTTCTTCATAATCTGTGTCG 860159 36 100.0 30 .................................... TTAGCAGAAAGAAGAGGAAGACATGATAGA 860225 36 100.0 30 .................................... AATGAAAGGATAAAATAAACATGCCTGTTT 860291 36 100.0 30 .................................... CAATAGCGTAAGCATGCAGTCCGTCACCAA 860357 36 100.0 30 .................................... AATTCTTTTAATTTTTTTGATTTTTCTTTA 860423 36 100.0 30 .................................... TTTCTTCAAAGGCAAGTATTTGTAAGTGGC 860489 36 100.0 30 .................................... ATTGTTAAAATATCGCTCGCCATTCATCAG 860555 36 100.0 30 .................................... AAAACACGCACTAGCAAAGCTGACGCTGAA 860621 36 100.0 30 .................................... AAGCCCGATCAAGACAAATTGGTTCTCCTA 860687 36 100.0 30 .................................... TTTTACATTTCTATAACAAATCGCGGTGAT 860753 35 77.8 0 ..................-AA..C.T.G.A.....T | C [860784] ========== ====== ====== ====== ==================================== =============================== ================== 29 36 99.2 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Left flank : ACGATTACTTGAATTATTGCTCATTTGTAAAATGTTGCGAGCAACTAGAGGAGATGGCCGACAATTACAGTAATTTTAGTGTCATTATTTTCCCGTCAAATGAAGGCTATCTTTATTTGAATCGCGAGAATATGGAATACGTCAATATTGTTTCTGATTTGGTTGAACATTTTTATGAATTTTCTTTTATGTATGAAAGGTTTATTGGTCAATATCCTACTAACGACGTACCTACAGAAGATGATTTCATCGTCTCTTTGCAAAAGATTTCACCATATTTATTTAGTAAAGACGTGACACATATGAGTTTATCTATCCAAGATATGGTAACCTTGAAAATTATGAACAGTTTATACCATTACAACAAGAAAATTCATTTTGCTTATAATCCACCTACTCAATTATTAATTAATTTTTTAAAAAATTAAGATTGACAAGCTCATCAAAGGACTTTATAATCAATGTAAGGGTACAAAAATCAAAAAATTTTTTAATTTGAG # Right flank : TTACAGAACTCATTATTGGGCATTGTTTAATGTAAAAGAAATTTAATGAAATAGTTATCTGAGTAATACATTAGCGGAATTGTAATTTAGGTTGAAATGGTTTATAATGAAAAGTAACAAGTATATTAGGAGGTCGTCTAATGGAGAGAAAAATTAAAAAATCAGTAGTTGCGACCGGTTTAGCAGCAACCACTATTATTTCGGGCAGTTTATCACATCAAGTAAATGCTGAAGAAGTAAAAACACAATCTACTGAGCCAAAGACATCTGAAAAAATCACCAAACCAGTTACAGAAACAGATGTTCAATCAGCAAAGATACAAGCCGATGCTGCAAAGGTTCAAACAGATGCTCAGCAAAAAGTTGTAGAGCAAGTCAAAGGAGATGTAAATACTTCAAAGGACGCGGTGGCAGATAGCGAAAAAGCTGTTGCAAATGCTGAGGCAGAAAAGAAAGAAGCAACTCCAGAAGTTATTGAAACCGCAAAAGAAGAAGTGGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1220504-1220335 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR594037.1 Streptococcus anginosus strain NCTC11064 chromosome 1 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1220503 35 91.7 30 -.....AC............................ CGTTCTGAACGCAAGCAACTTGCTAAAGAG TT [1220495] 1220436 36 100.0 30 .................................... CATCATGAGACAGTTACCTAAAGCTATTAG 1220370 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 97.2 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : AAGACTTCTAGCACATTGATTTCCAAGTCTGTTGCCAAAGACGGAGGTAAGACAGATTACCGCGGTCAAGTCCGTTTTGGCAAGAACAGTGCTGGTTCAAAGTCTCACATTGAGTGCGACACGATTCTTATGGATGGTGAATCCAGCTCAGATACCATTCCGTTTAATGAAATTCACAATTCAAATGTTGCACTTGAACACGAAGCTAAGGTTTCTAAGGTTTCAGAAGACCAGCTTTATTACCTTATGAGCCGCGGTATTAGCGAAGAAGAAGCAACTGCCATGATTATCAATGGCTTTATGGAGCCAATTACCAAAGAGCTCCCAATGGAGTACGCAGTTGAGCTCAACCAGCTCATCAACATGAGTATGGAAGGTTCTGTAGGATAAAAATAAAAACAGTCGTGAGGCTGTTTTTTTGTGCTCCTAATTGAAATAAGAGAAAGAAAAAAGCACCGAATCGGTGCTCACTTTTCAAGTTGGATACGGACAAAGCCTTA # Right flank : ACAATACACTTTAATCATAGGACTTGCAAAATTTTTCAATCGTGCTATAATACTTTTTAGAGACATATCGCTGACTGGAATCTTTTAGAGAGCGCGTGGAGCTGAAAATCGCGCAGAGGAAGGCAGTTGAGACTACTCTGTTAGCTTTTATGCAAACATAAAACGGTGGCTACGTTAGAGCCAATCAGAGGTGTCAACAAACTTTTTTGTTGTACATGAATGAAGGTGGAACCACGTTGCGACGTCCTTTTCGGGATGTCGTTTTTTTTATTTTGTTGAAGGGAGAAAAAGTTATGCTCTATATGATTGGCGGATCACCCTGCAGCGGGAAATCAACGCTCGCTTCCCTTCTTGCTCGGAAGTACGATTTGCTTCATATCAAGCTGGATGATTTGGTAGACGAGATGATGAGTCAAGCAAGTGTAGACTCACGACCGATTTGCCTTCTTAGACAGGACAGAAATCCGGAACAAATCTGGATGAGAAATCCAGAAGAGATG # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //