Array 1 13675-13908 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE993653.1 Clostridium sp. ATCC 29733 Scaffold74, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 13675 33 84.8 32 .........TA.GC..................A AACTGCCTCCAAAATCGTTGTATGAGACGTAC 13740 33 93.9 34 ............G...................A TGTCCTCGAAAATGCGGTAGTGGTTGCCGCCGGC 13807 33 100.0 36 ................................. TTGTAGGCCGACGCCTTGTCCCGGTAGCTGATGGAG 13876 33 84.8 0 ..........A..C.......C.AC........ | ========== ====== ====== ====== ================================= ==================================== ================== 4 33 90.9 34 GTCGCACCCCGCATGGGTGCGTGGATTGAAATC # Left flank : ATGGCGGCTGTGGCCCTCTACACTATCCGCCGCCGGCGCCGGACCGGTGCGGATGCCGAAAGGGTGGGGGACGAGCGCCCCGGTCTCCTCGGCAGGGACCTCTTCTTTTACAGTTTGGTCTCCGCCCTGGCAGCCCTGCTCTACCTGCTGCGGGGCTGTGCCCTCGACGGCATTGCCCTGTTGGCCGTCGCAGCAGTCGTTGTCGCCAGCGCCATTGCCGTCTCCCGGCGAAAGGCAGAGGGGGAGAGCGAGCACTAGTTAAAAAGGAGCGCCTTTTAGGCGCTCCTTTTTTGCGGACTGGGGCTTTTTCACAATGCTACGTCTCCCGGTGTGAAGGGCAAGCGAACAGGATTTTTCCAAGACCTTTGCACCGCGTGTGGGCAGTTGCAGGGGAGGAGTGATAGCGACAAAAGGGGACTTGTCGCTGCAAATTGACAGTATATTGGGGAAGCGGTATAGTAAAAAAGAAAGAGGATGAAGCGTTTTTGTGCTTTGTTGCT # Right flank : CCTCCCCAAGCACACTCCTGTCACCGTGGGTACATGGATAAACTTTCTAAGAAGTAGTAATCACGGCGACGAGACGGTTTGCCGCATCCCCCCGCGCCCTTCAAAACGGCGAGAACCCCACATTTGCGCGCAGCCCCACCATGCTGCCACCCCTTCCGCCTGAAAGCACCAACCGAGTTTTTGCCTCGCACGAGAGGAGTCGGCATAGAGGGGTTGCCCCACTTGCCCACCCAGCTCAAAGGGGGCAGGCCGCTTGCCTTCGCACCGTGACCAGGTGCGGGTGCAGAGAAAAAGAGCCCTCCGGCCGGAGGGCTCTTTTTTACAGCTGTGTGAAGATCCGCGCGCCTTTTGTGTTCAGCCACCCCCATATCACCAGGCAGAGGAGGACGGCGGCCGCAGTGGCCACAGCCGTGACCAAGACCATGGACAGGTGCAGGGCAAAACCGAGGCCGATGAACGCCGCGGCCAGAAGGGGAGTGGTGAAGTACCCCAAAAAGGAG # Questionable array : NO Score: 3.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGCATGGGTGCGTGGATTGAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.63%AT] # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2466-2238 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE993640.1 Clostridium sp. ATCC 29733 Scaffold52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================== ================== 2465 26 100.0 41 .......................... ATGGAGCGGATGTATCAGAGGGGCTTTTGCCGGGTCTCCTC 2398 26 100.0 41 .......................... TGGCCCTGGATGGCCCCGCCGGTGTCTTGCACCGTCTCCCT 2331 26 92.3 42 ...A..C................... GAGCTTGACCGTCGTCGCACAGGCCGCGACCCCCGTCTCCCC 2263 26 88.5 0 .......G......A...T....... | ========== ====== ====== ====== ========================== ========================================== ================== 4 26 95.2 42 CTCGCGTAGGGGGAGTGGATTGAAAT # Left flank : GTGCGCCGGGCGTCGGCCTGGGCGAGCGGGCTCCCCGACATGTCTTTGGCGCGGGAAGGCGGCGGGACAGCGTTCGCCAGACACCCGGTGACAAGGCAATCACACCTGTTGCGGTGGAGACTGTTGGGAAGGGGCCTTTCCCCACCCCGGCAGTTGTTTTGGCGGCTGCTGTCGGGGGGAAGGGCAACGTTTCATGCGCGTCCCCTCCCCTTCCCTGGGCTGAAGTGGGAAGGCGGCTGCGCGAAGGAAAGGGAAGAGGGCTGGGCGGCGAGTGCCCGGCTCTTTTTCTGTGGCAAGGTCGTCTCCCCTTGCGCGGCGGGTGCGAAGGGCAAGCAGACAGAAAACGCCCGGGCCCTTCGCACCGGGAAAACGCCAAAAGCAGGGCGAAAAAAGGGTCGCTCAAGGGGTAGGCGGACAGGGCGGTTGACAGCAGATTGGGGAAGTTGTATGGTAAAGACAATTAAACAGTCTCCTTTTTTGGAGATGTTTGCTGTCTCCTC # Right flank : CAGAGGTTGCTGTTGGCAACCAGAGTAGGGGTGTAGTCTCTCCTCGCTCGTGGGAGTGGGCATTGGCTAAAACCCGCTGCCTTGCGGCCCTCTACTCCCGGCTTTCAAGTCCTCTTCTGTCTTGAAAAAGTGGGTGGCAATCGGGCTCTCGGTGGCGCGCCCCTCCCCGCACAAGAAGGGCAACTCGCATCGCGGCTTTGGCCTCGGCGCTTTTGACGGTTTCGTCTTCCCCCTCCCGAGGAGCGATCCCGAGCTGCCGCTCCAAGGCCGGTGGGCGGTGCCGCGACCCCCACCATCGAAAACACCCACCAAACCCAAAGAGAGAGGGGAAACAAGCCGTTTCCCCTCTCTCTTTTTGTCGGCAGCCGGCCCTAGTCCACCACGCCGGGGGTGCGGCCGATGCCCACCACCTCGCTGACCAGGCGGCGCCAGGTGGCACAGCCGACGATGCCGTCGGCACTCAGCCCGTTGCGCCGCTGATAGTTCACCACGGCGGTGCG # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:0, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCGTAGGGGGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 27384-27149 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE993594.1 Clostridium sp. ATCC 29733 Scaffold292, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 27383 33 100.0 34 ................................. TTCTCTTCCATTTTCACTTCCTCCTAATAGGCGA 27316 33 97.0 34 ................................C CTACGCTAATAATTCCCGCGACAGTGGCAACAGG 27249 33 100.0 34 ................................. AGGCAATTTTTAAGGACAAACGCTCGGCTTTCTG 27182 33 90.9 0 ..........A........T...A......... | C [27157] ========== ====== ====== ====== ================================= ================================== ================== 4 33 97.0 34 GTCGCACCCCGCGCGGGTGCGTGGATTGAAATT # Left flank : TCTCCATCGAGGGGGAGGGGGCGCTGGCCAAGTGTCTCTGCCATGAGCTGGACCACCTGGACGGGGTGGTCTTTTGGGAAAAGGCTATCTGTCAGGTCTTTCCCCAGGAACAAAGCCAATAGGACGGTTTGTGGCTGGGATGAAAGACAGCTGCAAAGGGAGGAGAGTAGATGAGGAGCCCCTTCTCTGACTTTTGGAGTGGACGCACAGGGCGCTCGTAGAAGGGGAGCTCTTTCGCGCCAGTTTCCCTCTTTCGAATTGACATACCCGATTTTGATTGGCTTTTTTGCGGCTCTTAAAATAGCGCAGTTTTACCCTCATTTTGGGGCGGTGCGAAGTCCAAGCGGACAGAAATTCCCCAGTGGGTTCGCACCGAGGAATTGCAAGATAAGTAGATAGAGTGGAAAAGAAGAGAAGACAGCTGCCAAAAAATTGACAAGTGTTTGTGGAGAAGGTATATTGAAAGCGCAAACAACAGTGTGCTTTTGTGTATGTTTGCT # Right flank : TTATCAGTGTTCAAACCCAAAATGACCTCACTGGTCATATCCCGTGCAGATGCACATATTGCCACTTCTCTGGTTTTTCCCACGGAGTTAGAGGTTGCGCTTACATGGTAGCCATGTGCCGTGCGGGAAGAAACGGCACAGCAGATGCAAATCGCGTATTTATAAAAGATCCCCCTTTACAGGTGCGCCAAGTCTGTGGTCACCATCAGAGAAATCCATTGGCAGACAAATGCGCCGATGAGAAAAAGGAGGCAGATGTGTGAAGAATAGAGGCTTCTTGCTGGTGAGGGCCATCCCCATTTCGTTCATCGTTCTGTTTTTGGCGAGGACAATGCTGAAAGCACAGAATGTTTCGAGCAGGATTGTGATCCTCCCCTTTTTGATTTGCGGCCTCACAGAGCTTTTGCGAACGATATTTTTGGCAGTGGGTTGGGAGAAGGCGGCAAAGCTGCTCTACAAGGTGTACGCCGCCAGCTTTTTGCTCTACGTGTTTGGTTTCC # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGCGCGGGTGCGTGGATTGAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.80,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 9708-9540 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE993546.1 Clostridium sp. ATCC 29733 Scaffold162, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 9707 32 100.0 37 ................................ TGACCGATTCACTCAGCGACTGGCTCACCGAAGTGAT 9638 32 100.0 35 ................................ TTATAATACACGTTCCATTCGGACAAGTCAAGCTT 9571 32 96.9 0 ......................G......... | ========== ====== ====== ====== ================================ ===================================== ================== 3 32 99.0 36 TTCAATCCACGTCCCCTGCGTGAGGGGACGAC # Left flank : AGATGAAACCGACCGCCTTTCTCATCAACACCTCCCGTGGGGCTTTGATCGATGAGCCCGCCCTCATTCGGGCCCTGGCCGCCCGACAAATTGCCGGGGCCGGACTGGATGTGTTGGAGCAGGAGCCCCCCCGGCCGGACAACCCGCTCTACACCCTGGACAACGTGGTCCTCACCCCCCACATGGGTTGGAAGGGGCTGGAGACCCGCCAGCGCCTTGTCGACTTATTGGGGGAAAACATCGCCGCCTTCTGCCGGGGAGAGCCCCGCAATGTCATCGTCTGAACTTCAATTGACAGATCAAGTGGATAAAAAGAGGGAGCCGGAGCAGCAGGTGCTGCTCCGGCTCCTTTTTGTTGTGAGGCGTATGTGGGGCGTTGCGCTTTGGAATAGGAAGTTTGCACAGCGGCTGTGTCTGTGCAGACGCTAAAGTTTTGGGTTGTGTCCTCGAATAGGGGACGATCCGCTGGGAGGGGTCATGCGATTTCATGGACATACCAG # Right flank : AGCAAAACAGCACAAAAACAAGACGCTGCTTTCCTCTTTAGGATACTCTTTCCACAAAATCCTGTCAAATGCAGATCCCATTTTTCCCAAACCTCTCCATTCCACCGCAAAAGGCCGGTATTCTGCGGTGCGAACCTCCCGGCAAATGGGTGTGCACTTGGGGTTCGCACCCGCGAATTGGGTAAAAAGCGCGCAAAAGAGCTGGACGCAGACGCGTCCAGCTCTTTTGAATCGAGGGATATGCAAGGGCAGGGCAATCAGCCCGGGGGCCAGGCCAACGAGCGGCCGGCCAGCACGTGAAAGTGCAGGTGACCCACCGTCTGGCCGCCGTCTTTGCCGCAGTTGTTGACGATGCGGTAGCCGTCTTTCAGCCCCAGCTCCCCCGCCAGCTTGGCGATGGTGGCGAAGATGTGGGCGACAATGGCGCTGTTTTCTTCGGTCAGCTCGTCGCAGCTGGCGATGTGGGCTTTGGGGATGACCAGAAAGTGGACCGGCGCCTG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAATCCACGTCCCCTGCGTGAGGGGACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //