Array 1 2106368-2108283 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071888.1 Akkermansia muciniphila strain KGMB01988 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2106368 31 100.0 34 ............................... ACCGTATTCACTTATGAGGGTATAGGCTACTGGC 2106433 31 100.0 34 ............................... AGCGGGTGTGAGGTAGTAGCGGTGGACGAAAAAC 2106498 31 100.0 34 ............................... GATTGAATGCAATGGCCTATTCTCTGCCCCGGAA 2106563 31 100.0 34 ............................... GCTTAACTTCTGCGACTCATCCACCAGAGACAGG 2106628 31 100.0 34 ............................... TATCAGTCCCATGCGGATAGGCACAAGACCCCTA 2106693 31 100.0 34 ............................... ATCTTTTGAGGAAATAAGCATAACGCCATAGGTT 2106758 31 100.0 35 ............................... ATATTGCAAGTACACGGGCGCATGCCATGAATACG 2106824 31 100.0 33 ............................... CAACTATCATCCCACCATGATGAAGAGATAGAA 2106888 31 100.0 34 ............................... TTCAACATCAGGGACATTGAAGGCCTTGCGGGCG 2106953 31 100.0 34 ............................... GCACCGGAATCGGTATATTTCGGACGGCCTGACC 2107018 31 100.0 34 ............................... CCGCCTCGTAGGTCTCGCATTCAGCGGGTGTGAG 2107083 31 100.0 34 ............................... AAAGCCAAAAGAAGCCAAAAGAAGCCAAAAGAAG 2107148 31 100.0 34 ............................... TCCCTACCCTTTTAGTAGGGATTCCTTGTTCCTA 2107213 31 100.0 34 ............................... CTACTAAACCTATCGGAATTGTGATTGAAGGCAT 2107278 31 100.0 34 ............................... CGTTTCCCTGGTGGGGTAGATAACGGTGGAATAT 2107343 31 100.0 34 ............................... CGCTCACTTGTATCTAAAAGGGTACAGTATAGCA 2107408 31 100.0 34 ............................... AATTTGTATGACACAATCGTAAGTTATTCAGCAT 2107473 31 100.0 34 ............................... TGTTTCCCCGGTGGGGTAAATAACGGAGGCATAT 2107538 31 100.0 34 ............................... CCGCCGTAGGACAATCTCCCATGTGCTATGCGCC 2107603 31 100.0 34 ............................... TATAGCCAATTGTGAGAGTTTCCGGTTTGTAACA 2107668 31 100.0 34 ............................... TGCAGCCAGGACTAGGGATAAGATTCCCGCGCCG 2107733 31 100.0 34 ............................... AGCATCTAAAATATGTGCGTAAGCTTCGACACGG 2107798 31 100.0 34 ............................... ACATTATATCATAAAAATAAGAGAGTTATGAACA 2107863 31 100.0 34 ............................... GGTCCCTACAAATTACCAAGTCCCCCTTCTTAAA 2107928 31 100.0 34 ............................... TTATCGTCCAACGAAATAATGACGTCCTTCCACG 2107993 31 100.0 34 ............................... TACTTGGAGCGGAAACTTTCTACGGCATGGTCGA 2108058 31 100.0 34 ............................... CGGAATGCTCGACGGCAATCTTCAACGCGTTATT 2108123 31 100.0 34 ............................... TATTTGTTTGGTTTGTGATTGTGCGGGGGAACAA 2108188 31 100.0 34 ............................... CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA 2108253 31 90.3 0 .........T...................GT | ========== ====== ====== ====== =============================== =================================== ================== 30 31 99.7 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCATTAAGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCTGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCCGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2607212-2606775 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071888.1 Akkermansia muciniphila strain KGMB01988 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 2607211 32 84.8 34 A.T.....TA-...................... TAATCCAGAAGTTAATGATATCACGGGGACGGGG G,G [2607204,2607207] 2607143 33 100.0 34 ................................. CATGACATAGAACGCACGTACCTTCCGTCTAATC 2607076 33 100.0 34 ................................. CCCGGTGGGTAATATGGACCATACCGCTGTGACA 2607009 33 100.0 33 ................................. TAGAGAGCGAGGCAGGCCGCCCGGTTGCCTATT 2606943 33 100.0 34 ................................. CCGGCGTAGGACAATCTCCCATGTGCTATGCGGC 2606876 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [2606853] 2606807 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= ================================== ================== 7 33 97.4 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : ATGGGGAGTGGATGATTTACGGCTGTTTGTACGCCTTGCGCGGCCGGGTCGCCAGGCGATTGCTCCGGGATATGGATTGGGAGAACATGGATGCCCTGGCTCCGGAGGACTGGACTATCGGACGGGCGGCATTGACCAGTTTGCCCGCCGCGCTGGCACGTATTGATGAACCATGGAGCCAGCGCACGCCGTGGAGTTCATGGACGGCCTGGTGCTGGTACAGCCTGACGGCCTCTCCGGAGCGCTACGCCTCCCGGTTTGCTGTCGTTACGACCGGCAATCCTCGACTGGATACCCAGCCGGCCAGCGATCGGGCCAGAGTGATGCACCTGCTGGCCGATGCCAGGGAGCGGATGATCCCGGAGGATGTCTCCAAAGAGGACGACGAGGCGGTGGACTGGGGAGACCTGCTGGCCGCCTGCAAGGGAGATGCAAAGGCGTTGCAATGAGGGGTGTTTAAGGTCGTTTTTCCACAATGCTTGATAAATTTTCTACAAAGC # Right flank : CTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGG # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,10.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2638920-2638152 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP071888.1 Akkermansia muciniphila strain KGMB01988 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2638919 33 100.0 34 ................................. CTTGCCGTTTGCCCCTGATGACTATTTCCGGGGG 2638852 33 100.0 34 ................................. AATGTCCCTGATGCTGAATAACTTACGATTGTGT 2638785 33 100.0 33 ................................. GATTCATGGCAACGGGGGTAAGTGGCTTTTCGC 2638719 33 100.0 33 ................................. TGCCAGTAATAGCAAGTGTAAGGGCCGTTTCTT 2638653 33 100.0 34 ................................. GCACCGGAATCGGTATATTTCGGACGGCCTGACC 2638586 33 100.0 35 ................................. CCGCCTCGTAGGTCTCGCATTCCGCCGGGGTTAAG 2638518 33 100.0 34 ................................. AATATCCCTGATGCTGAATAACAAAACCACTAAA 2638451 33 100.0 34 ................................. ATAATTGTTTCCTTTCTTTAGTGGTTTTAGTTTA 2638384 33 100.0 34 ................................. CGGACGGCCTGACCCCTCCACCAGCAACGGAATC 2638317 33 100.0 34 ................................. TCTTAGCGAAAAGCCGGATTCCTTTCCAGGTCAT 2638250 33 100.0 33 ................................. TTGGTAGTCACAACATGAAAGCCGTTATGCCTT 2638184 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 12 33 100.0 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : AATTTGATTTGATTATTCATTGTTTTATTTCTTGTCGCACTCCGCAAGGATGATCTTTATCAATGAAGGGTGGAAAGGGGTGAATTTAGGGTGAATAGGGGTGAACGCTAGGAAAATCAAGGGGAGCAAGCGTTGAGTGATCAGAGAAAGACTGTGTAGAAAATATCGGTGTCAGAAGAGGAAATTATCAAGCAGTGTGGAAAATAATCATGGTAAGATGTCCCGCATGTGTACACCTGCATATTGCATCCCCTTGTATGGCTCCATGACTGTTATCTCGCCCGGAGACCGAAGGAAAAAGAATCCGCAAATTTATCATCTCCATGATACCGCTGTCGTGTTGATGTGGACAACCCGTGAAAGAAGAAAGACGACATGCTGGGTGCGGGATGTGCTCGACAACGTGTGGATTGTGATCAGGAACGAAAGAGAAGATGATTGAAAAAAGGCCGCCAGGAAAAACCTGACGGCCTGAATTGTATTTGCCCATTGTTACAGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //