Array 1 2113-47 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPWH01000117.1 Alkalispirochaeta sphaeroplastigenens strain JC133 ctg7180000005700, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 2112 32 100.0 34 ................................ AGCCCCCGGGGGAGCACCGACACCCGGCCCCTCG 2046 32 100.0 33 ................................ AGCGCGCTGATCGCGGTGCCGTCGTAAACGTCC 1981 32 100.0 33 ................................ CGGATAAATCCAGCCGTCCTCGTCGGGGGTCAT 1916 32 100.0 33 ................................ TGTAAAAAAGATAATTTGTCAGCGGCGGTCGGT 1851 32 100.0 33 ................................ TGGCCGGTCCGTGGGACCTGGTGGTCACCGATG 1786 32 100.0 34 ................................ TTCTGCCACAACTGCCGTACGCCCGCCCGTTTGC 1720 32 100.0 33 ................................ TCGGACCAGGCGCTCGAGTGGCCTCGCCGGGGT 1655 32 100.0 34 ................................ CGTCCCCGCCGAGATGACCCCCCAGGAGCTGACT 1589 32 100.0 33 ................................ AACATAGGGAGCCGAATCAAATTCACTGAAATC 1524 32 100.0 32 ................................ GTCCTCCCAGTACCATTCAGCCGTCGAGGGAT 1460 32 100.0 34 ................................ AGCTCATCCACCGCGCCGTTGAGCTGGTTACTGG 1394 32 100.0 34 ................................ AAATCCTTTCGAAGAAAGGAGTTGTGAGCGTAGG 1328 32 100.0 34 ................................ GTATACGTCTCGTGGATCGTGTTGTTTGGTTCGT 1262 32 100.0 35 ................................ TGCAATTATGGGTTATAATACCGCCAGCGATATAG 1195 32 100.0 34 ................................ CCCGCTCGGACGGCGGGTATGACAACCGGATTGT 1129 32 100.0 33 ................................ CTCACCACCCCCGAGATCGAGACCCGGCAGTTC 1064 32 100.0 34 ................................ CAGACGCTCGATCACCCCTGGGTCACCGACCCCG 998 32 100.0 34 ................................ GGCGACACCGAGACGGAACTGGTCGAGCGCCCTG 932 32 100.0 34 ................................ ATTGCGTACGCTGGATGGATCGGCAGATCATGAA 866 32 100.0 34 ................................ GCGGTTGATGAGTGACTCATTGCCAGATGTGCCC 800 32 100.0 34 ................................ AGCACATCACCCTCCCAATCGCCGAAAAGAGCGG 734 32 100.0 34 ................................ GCAGGTACAAATCGAGACTCGGCCAGTTGGTCAG 668 32 100.0 34 ................................ CGGAGCAGTGATCCGGAGACCGCGACACGGACGT 602 32 100.0 33 ................................ ATGACGAGACTGTCGGGATCGAGCTGAAGGCGA 537 32 100.0 33 ................................ CAAGAAAACCGGCGAAGACCTGTTCGGGGGGAA 472 32 100.0 35 ................................ CCAAGTCACCGCGCGTTACCGCCAGGTTCTCCCAG 405 32 100.0 33 ................................ CAAGAAAACCGGCGAAGACCTGTTCGGGGGGAA 340 32 100.0 35 ................................ TCCGATTGCTCCTCGTACTCCCAGCGAGCAATTAA 273 32 100.0 33 ................................ TGATGTGATCGACATGTACGAAAGCGGTATCGG 208 32 100.0 33 ................................ GAGTCCCCCCGGTCAATCAACGCCTGGATCTCC 143 32 100.0 33 ................................ CGGGCCTCCCGGTCAATCAACGCCTGGATCTCC 78 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 32 32 100.0 34 GTCGCCCCCCGCGCGGGGGCGTGGATTGAAAC # Left flank : TTTTCTGGAGATAACGACATGATGGTACTTGTCAGTTACGATGTAGCGGTGACCTCACCCGGCGGGGCTACGAGATTGCGGAAAATTGCCAAGGAGTGCCAGAATTACGGACAGCGTGTGCAGTACTCCGTGTTCGAATGTGTCGTTGACCCGGCCCAGTGGACGCGTCTCAAAAACAAGCTCGAAAAGATAATCGACCGGGAGCAGGACAGCCTCCGGTATTATCACCTCGGATCAAACTACAAACGCAAGATCGAGCACATCGGCGCAAAACCGTCCCTGGACATGGAAGGACCGATGATAGTTTGACTGCTGAGGAGACATCGCGAACCGTAAAGGTTCAGGAACTCCCGGAAGTTCCGCGGAAGCCATAATTCTTTTTGTAGCAATGTTCTTTTACAGCATAGAGAAGGAAAAGCAGCCTCTCTCGGCGAGCGTGAACAACGTTCGCGAATCGGCGCTCTTAACTCACAGGCCGAAAAAGAGTTATCATTGGTAGT # Right flank : CTTATCCATGTCCCCCCCCGTGGACCGTCTCGGCGTCGCCCCCCGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCGCGCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCCACGCGGGGGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.20,-11.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1722-954 **** Predicted by CRISPRDetect 2.4 *** >NZ_LPWH01000013.1 Alkalispirochaeta sphaeroplastigenens strain JC133 ctg7180000003816, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================================ ================== 1721 32 100.0 33 ................................ TCCTCGTCGCGGAGGATATCCTCCTCTGCCCGG 1656 32 100.0 34 ................................ AACAGGGATCACTCACCGCGATGAATCCCCTCAG 1590 32 100.0 34 ................................ ATGTCAGATTTTTGTCAGATCGCATTACCATCGA 1524 32 100.0 34 ................................ AATTCCCGCGTGCCCCGTATCTTCCGAACGGCCT 1458 32 100.0 34 ................................ CTGGCGTGTGTGTTCTCCTGGGCCTCGGTGTCGG 1392 32 100.0 35 ................................ AATTTCATCATCGCCTTGACAATCCCCATTATACC 1325 32 100.0 34 ................................ CGCGCACCAGCTTTGTAGTGCACGACCCGCGCCT 1259 32 100.0 34 ................................ GAGCACCGCCACCGCATCGGTGTGGGTCGTCGGG 1193 32 100.0 34 ................................ TGCATCATGTGCTGCTCCGCCTCCCGCTGCTGCT 1127 32 100.0 34 ................................ CGGATTAGCGAGTGGTACGGCTGGACGGGCCACC 1061 32 100.0 44 ................................ ACTATCAGCGACATGACCGCCAAGCTTATCAGCGGTCGCCCCGC 985 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ============================================ ================== 12 32 100.0 35 GTCGCCCCCCGCGCGGGGGCGTGGATTGAAAC # Left flank : GGGGCGTGGATTGAAACACCATCCCCGCCGGGGCCTGGTCGCTGTGCCC # Right flank : GCGTCCGCCAAGACGTCATAGGTCACACCTGTTGGGACCCGCACTATTTGTTTATGAATCTGGGGATATAACCGAAATACTGTAGTTGAGACTTGAAAGAAAGGGGAAAGGAAACCGGGCTCATAGGTTAGTGGCCTACCCGGTTTCCCCCACCAAACTACAGTTATACTAATCGACCGTTCCGTTTGTGACTATAGCCTCAGCTGGATAGAAATCTTCTGGCGATCGATTCTCAGGGAAGAAAGCTGTCCGCACTGCGGAATGGTTGGCCGTTTCTCCCGTCACGGAACGTATACGAAATACCATTACAGCCGCTTGATCCCGATTTTGCGTGTCCGCTGCCACCGGTGCAGGAAAACCCATGCATTGATCCCGTTGTTCTCGGTTCCAGGAACTTCAATAGGATTGAAGGAGCTTGAATCGTTCATCCTCAGGCGCTCTGGCGGCGCATCGCGAAGGGAGGCTGGTGCGCTCCTGCGATTGCGCGGTCTTGGTGAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCGCGCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCCCCCCACGCGGGGGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.20,-11.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //