Array 1 10872-10322 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYBH01000094.1 Calothrix rhizosoleniae SC01 isolate 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 10871 37 100.0 36 ..................................... ACATTGCTGCCAGTTTATTTAGATAACCACAAAAAA 10798 37 100.0 36 ..................................... ATGAAATTGCTTGGGGCTGGGGAAGGATCTGCAACT 10725 37 100.0 36 ..................................... ATTTAAAATCTAACCTTATTGATCCAACCCCACACC 10652 37 100.0 36 ..................................... ATGGCAAATAACCGGGACTCCCCCAATTTCAAAACC 10579 37 100.0 32 ..................................... TATTGATGTGCATTCAGTTAGCGATCGGGAAA 10510 37 100.0 36 ..................................... CAAATACAGATATTTCCTCTAGAAGCGATCGCAACA 10437 37 94.6 41 .....T..................G............ GATATATCAGCTTCCCAATCATTATCGCCAATGTCCCTGAA 10359 37 86.5 0 ..................TC..C........AA.... | G [10330] ========== ====== ====== ====== ===================================== ========================================= ================== 8 37 97.6 36 CTTTCAATTTAATGAATCCTGGAAACGGGATTGAAAC # Left flank : ATGTTTTTTAACTAAATTACAGTTTGCTAAACTCAAGGTGAAGATAGAAGAATTAATTAAGCAGCAGGAGGATTCAATCCGTATATATGTGTTAGATTCCCTAGCTGTACGCAAAACAATTACTTATGGTTCTGAAGAACCTAAACACAATCAAACGATTATTTTGTAATAGTTTGCTAGGATATTTTTGACCAAAAAAGAAAAGGATACAAGCCCCCGGATTTATCCGTGGAAAAAGAAAAAGTATTTTCCTTATTCAAGCCCCTCTATTTATCGATGGGGTAACTGATAACTGATAACTGATAACTGAAATGACGGGGGAAAGCGAGGGCGAAAACCCCAGGGGCCCGGTCAAAACGCTAGAACCTTGAAAATTCAATACTTTCAGCGTATTTACTGTTCTATGTTGTTGGTTCCTAAGTCTCTGAAAAGGGGTTTTGTAAGTGCCCCGTCAAAATCTGCTCTGGATATAGTGTTATAACTGAGTTGTGGCTGGCGGA # Right flank : ATGGATGCACCCTGTAGTTGGGATTAACCATGTTTTTATTCCCAATAGAAGCGACAATATGTTTTACGGTATTTTCATAGGTAAACCGCAGATTTATCGGTGGAATCAATCTAAAACTGAAAATTGTCATGACAAATCAATCCGTATCAGAAATTCCTGTTTGTGCTTGGAGTCGTCCCATCGGTTTAGGCTGGGATAACCCCTATACTGTTCGCTACCCTAGCAATATTGATGATGGTCCTTGGCAGGGAATGCCTCTAGGCGGTTTCGGTGCGGGTTGTATTGGTCGTTCTTCTCGGGGAGATTTTAACCTCTGGCAAGTTGATGGAGGGGAACATGTCTTTCAAAATATCCCTGGTTGTCAATTCAGCGTATTTGAATCAACTACCACATCTTCCCAGGCTTATGCCTTATGTACAACAGCTCCGGAGAATGGTAGTTTAGCAGCTTGGCAATGGTATCCTAGTATTGGAAAAAACCAAGAGAATCATAGTCTTCAA # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAATTTAATGAATCCTGGAAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 28-356 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYBH01000126.1 Calothrix rhizosoleniae SC01 isolate 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 28 37 100.0 36 ..................................... ATGTAAAAGATTGGTCAACTATTCCTAATAAGAAAT 101 37 100.0 35 ..................................... ATTCTAATACTCAGAGCTATAAGTAAATCTTAATT 173 37 97.3 38 ........................G............ ATAATGGTTATACTGCGGCTATTCCTTTACTATATCGT 248 37 100.0 36 ..................................... CTCAAACCAGTTCAGTCACACTGAATCCATTACCAA 321 36 91.9 0 .................................-T.G | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 97.8 36 CTTTCTTATTAATGAATCCTGGAAACGGGATTGAAAC # Left flank : ACCTTGTCTAGTAGCCAAAATTTATTAC # Right flank : GATTGTTAATTTTGTTTACGAATACGTTTTTCTAATTCCGCTTCTGCTTCTTCAAGAGTCATCGGAACTGATTTAACAGAAGCAGCACGCTTCCTATCCACATAAACATAAAACGCTTGCTTATCTTCTGGATGTTGTTTAACATACATCAACAATTCTGTATCTGACATAGCTTGATAATTAAGCTGTTTCATTGAATTAACACCTCTCCATTTGGAAGTATTTCAATTTGTATCGTCTCTCCCACCAAAATAACAATTCGTTCGACACGTTCATCATATCGAACCAAGTTGACCGGCTGAAGTAAATTGCTTATCCTTACCACCATTCTATAGAAAGATTTCAATTGCTGGGCTGTTGACTCCATATGTCACCCCATAATTTAAAAAACATGAATCAGTATCGCAAAACTAGTTCTAAGACGCTTATTTTTTCTCTTAAAAAAGCATAAATTACCATTGATTAATTAACCCAGATTAAAATAAGAAAAATCATATTTT # Questionable array : NO Score: 8.95 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCTTATTAATGAATCCTGGAAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA // Array 1 1884-1707 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYBH01000391.1 Calothrix rhizosoleniae SC01 isolate 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ================================= ================== 1883 38 100.0 33 ...................................... GGTAATATCCGCCATCGGGGCGAAAAATGTTAC 1812 38 100.0 30 ...................................... GATAGTATCATACGCTCTTTTTGCCGTTGC 1744 38 92.1 0 ..................T........A.......G.. | ========== ====== ====== ====== ====================================== ================================= ================== 3 38 97.4 32 CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAACAT # Left flank : ACCAGTTTAATTCAGCTTCCAGCAGAAGTATTACCAATGGCTCTAATTCGTCCCCTTTCTGGAGGGGGTGCATTAGGTATTATGAGTGAATTGATAGAAAAAGCACCAGATTCTTACAGTGCCTTTGTTGCCTCAACCATGATGGGAAGTACAGAAACAACTTTTTATGTGCTTGCTGTTTATTTTGGTGCAGTGGGAATTACTCGCATTCGTCATGCTTTAATTGCTGCTTTATTAGCTGATGCTACTGGATTAATTGCTGCCTGTTTCCTTTCACCTATATTTTGGACTAATTAAGGAGGTTTTGTAACATGACTATCGACACCAGTCGTCAAATTACTGAAATACCTATTATTTGGTTGAGTGGTGTCGATCGCTTGCGGGGTGAGGATTTGAGCTATGTGTTTGACCCTATTTTGAGGAGCATTTATAATGTTTTTTCAGAGTGGTGTCGATTTGGAGGCTGAAACCCTTACTGGGTAAAGACTCCTCAGCTAACT # Right flank : TGCATCTTTGTAGTCGTTTGAGAAAGGTACAGTTATAGCACTACCAAAGCATGTTAGGACATTCTTGAATTTCGAGAATCCATGAAAAATCAAGCTTTTAGTCTGAAAATATGTCCTAACCTAAAAGCGTAGTGCTATAGCCCTGAGCGGAGTCGAAGGGCTAACCCAATTACATAGTGTTATAATTCATCAATTAATATTGCAGATATGAGTTGTGAGAAGCGAGTATGAAACCTCCAACTAAACCCATATACGATAATTACCACGCCCATGTTTACTTTGACCAATTAAGTCTGGAACAAGCCACTGAGTTATGCCAGAAAGCAGGTAAATTATTCAACATTAAAGTTGGTCGAATTCACCAAAAGCCAGTGGGACCCCATCCCTGCTGGAGTTGTCAGTTGTCATTTTCATCTCAAGAATATGAAAAATTGATCCCCTGGTTGGAGTCAAATCGAGAGAATTTAAATATTCTCGTTCATGGACTGACTGGAGATGAT # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 1266-1438 **** Predicted by CRISPRDetect 2.4 *** >NZ_FYBH01000169.1 Calothrix rhizosoleniae SC01 isolate 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================== ================== 1266 28 100.0 43 ............................ TAGCCATCTTGATTTGATTGCTTAGGGAGATTACATCCCACCG 1337 28 100.0 46 ............................ GCTTCCATTTCTAGGACTTTTTGCTTCATGCGATCGCGCCCCATCA 1411 28 75.0 0 ..............C.....A.CA.GCT | ========== ====== ====== ====== ============================ ============================================== ================== 3 28 91.7 45 ATTGGGTTAATTCGGATTAGTTGGAAAC # Left flank : GAGCAAGAGATATTAGTCGAAAATCCTAACTTCAATATGGTTATCCCAATCAAGAATCAAAAAGGATTGGGAACATTTCAAGTCCCGGCAAATTCTGAAATATCACGGGTAACAGAATTCAGACTAGAACATATTGATGAAGAAGTTGGTAAGTTTTGTCTGTTCGCATGGAAATCAACAAATATAATACTACAAGAAATTTACGAGCAGTTTTTCTAGTCATAAACCAATACCGTCTAATTAAACCTGAAAACTAAAACTGGCATTGGTAGTGGTTTCGCTCCTCAACCTAAACTACTATTTTTCTTAACTTTTTTCATCTGGGTAAATTCTTCGTAAGGGCACGGCACCAGTAAGATACTTTTATATATTGAAAGATTGTGGATGTTCCCTACCCATCTGTCCCGTTCTTTTTTCAAAATGGTATAATTTTTACAGTGATGTCAATTTGGCGGCTGAAACCTTTACTGGGTAAAGGCTCCTCAGCGAACTCCCCACCG # Right flank : TATACTGCCATCAAAGCAACCATGAAAAGAACTAATTGATGTGCAGACAGTTGACTTTACAACCTTGATTGCAGTTTGTAGCGATATCCGCGCTCACTGGCTACCATCGCGTTTAGAAAAAGTTTACCAACGCGATCGCTATACTATTGCCATCGCCTTACGAACTTTAGTAGGAAGAGGTTGGTTAGATATTTCTTGGCATCCCCAAGCAGCAAGGATGTGCATTGGTGATCCTCCGCCACGATTACCAGATACTTTTACCTTTAGCCAACAATTGATACATATGTTGGGTGGTTTGGCATTAGTTGCAGTAGAAGCGATCGCTCCGTGGGAACGTGCTGTGGATTTACAATTTGCCCGTCGTCCGGGAGAAAGCCCACTTTATCACCTCTATGTGGAAATTATGGGCAAATATAGCAATGTGGTACTTACGGATACGGATAATCTAATTATTACCGTCGCCCACCAAGTAAATGAAAAGAAATCTAGTGTTCGTCCTC # Questionable array : NO Score: 4.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGGGTTAATTCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //