Array 1 942332-943885 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETZK010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SARA8 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 942332 29 100.0 32 ............................. TACGCCCCGTTTTTCTCAGCGACCTCACACGA 942393 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 942454 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 942515 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 942576 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 942637 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 942698 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 942759 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 942820 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 942881 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 942942 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 943003 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 943064 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 943125 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 943186 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 943247 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 943308 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 943370 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 943431 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 943492 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 943553 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 943614 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 943675 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 943736 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 943797 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 943858 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 960018-961371 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAETZK010000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain SARA8 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 960018 29 100.0 32 ............................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 960079 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 960140 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 960201 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 960262 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 960323 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 960384 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 960445 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 960506 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 960567 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 960628 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 960689 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 960750 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 960811 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 960872 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 960934 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 961037 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 961098 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 961159 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTG 961220 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 961281 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 961342 29 96.6 0 A............................ | A [961368] ========== ====== ====== ====== ============================= ========================================================================== ================== 22 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //