Array 1 3226042-3226805 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034550.1 Saccharothrix syringae strain NRRL B-16468 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 3226042 37 100.0 36 ..................................... CCGGTCCCACACCGCGTCGCGGCCGGCGGCCAGCTC A [3226046] 3226116 37 100.0 35 ..................................... GCTTCCAACTTGGCGTGGACGCTCGCCGCGGTACT 3226188 37 100.0 37 ..................................... GATGCAGCTTGACAAGCAGTTACACGCAGTTGTATGC 3226262 37 100.0 35 ..................................... TTCCTGCGTGTGCGATAGTAAATCGGGGCGGCGCC 3226334 37 100.0 33 ..................................... CCGCGAGACCCGTGGCTTCGGGCCCTCGCCCGT 3226404 37 81.1 33 .....A.C..........AA..G.T...........T CCGCGAGACCCGTGGCTTCGGGCCCTCGCCCGT 3226474 37 89.2 35 .....A.............A..G.T............ TGGACCAGCGTCAGCGCCGTCTCGACCTGCGCCAT 3226546 37 86.5 36 .....A.C...........A..G.T............ CACCGACCCGGCCGGGCACTGGGTGCCCCTGGGGCC 3226619 37 86.5 37 .....A.C...........A..G.T............ GTGTTGACGCTGGCGACGCCGGAGCGGACACCGACGT G [3226641] 3226694 37 81.1 36 .....A.C....T.....AA..G.T............ TACCGGGACGTCGCGCTGTCGGACGACATCGCCGAA 3226767 37 83.8 0 .....A.C......G....A..G.T............ | CG [3226797] ========== ====== ====== ====== ===================================== ===================================== ================== 11 37 91.7 35 GCAGCGCTGGCCCTCCGGGGCCAGCGAGGATCGCAAC # Left flank : GCCGATCCAGGTGGCTCGCTGCGGGCGGTATGCGGGTACCGGGTCCACTCCTGCCTTGGCGGCGGCTCGGTCGAACCGCCACCCGCGTACCGCGACCACCAGGCGGGCCAGCCAGGCCGCTGGTCCCCGCCACGGCTTCACCCACACCGCCTGCACGAGCGTACCCAGCGCCTGCGCTGTGAACGCCGCGGCCGCCGCGCCGAGCAGCATGCCGACGGCGGCGACCGCGAGAGGCAGTCGGGGGAACGCCGAGACGATGTCGTTGCCGACTCGTACGACGTCCAGTGCGTTGTGGTGGCCGAGCCGGATCGCACACACGACCGCGACGACGAACAGCGCGCCAGGCAGGACGAGTGCGGTGACCCACCGTTCGGCGAGCTTTCCGCCCAGTCCCTGCAGGAACGGGTTCACCGCGGTGAACCCGTGGGCAGCATCGGCGAGTTGTCGAACAGGGCGCAGACCGGTGGGTGGCCCTCGTCGTCACGGCGGTCGTGGCGACC # Right flank : CCCCGCCTTTCGACGACCGCCATGATGACGGCCAGCGTGGCACCGCCTCTCCTGGACCGGTGGGGATCGGAAGGTCAGGGGCGGTGTGGTGCTCGTCGAAGAACTTTTGAGGAGGACCTGTCTGTTGGTCACTTTGTGGTGCAGCACCGATATCGGGGCCGGTGCTGCTCGTGGTGGTCGGGTTGTGGGCGAGGTATTGCGTACCGGGTGTGGTGTACGTCGTGGGAGCACTGCTGTGGGAGCAGTTTGGGAGCCACTGGCGGCATCCAATGGCGCTGGACTGCTCCAAACTGCGTTCAACTGCACCCATGGCATGTGGTGGAGTCTTGTTTCCGCAGGTCAGAGTAGTTGTTGATCTACGTTGACGCAGTAGGGCTCTTCCGAACGTTCTCCAACTGCGCTCAATGGCACGAAACCGCAGGTAGCGGCGGTAAACGGCGCTGCTGACGGCTGGTGGAACGTGGTGACCGCATACGTAGCTTGGGTGCAGGCGAGGTGGT # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCTGGCCCTCCGGGGCCAGCGAGGATCGCAAC # Alternate repeat : GCAGCACCGGCCCTCCGGGACCGGTGAGGATCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCGCTGGCCCTCCGGGGCCAGCGAGGATCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-19.60,-17.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 9122635-9123396 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034550.1 Saccharothrix syringae strain NRRL B-16468 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9122635 29 100.0 32 ............................. ACGTTGTCGTCGGCCCACTCGTCGGGGCGCAA 9122696 29 96.6 32 ............................G GCGCAGTGCCAGAACTCCCGCCACGCCCGGTC C [9122705] 9122758 29 96.6 32 ............................G ACCGCGCGCACACGCTCGCGGAACCCGGCCAT 9122819 29 100.0 32 ............................. CCGCACGCGTCGCGACTGCCCGGCGGCGGTCG 9122880 29 100.0 32 ............................. GCCATGGGCGAGCTGAACGGAACTCCGGTGAC 9122941 29 96.6 32 ............................G ACCGCGCGCACACGCTCGCGGAACCCGGCCAT 9123002 29 100.0 32 ............................. CCGCACGCGTCGCGACTGCCCGGCGGCGGTCG 9123063 29 100.0 32 ............................. GCCATGGGCGAGCTGAACGGAACTCCGGTGAC 9123124 29 96.6 32 ............................G TTCACGTGGCACGTCACGCACGGCCCGTCCGT 9123185 29 96.6 32 ............................G GACACCACCCGCGACGCGGAGTCCCGGCTCAA 9123246 29 96.6 32 ............................A AGGTGAACTTCGCGGCCCGTCAGACCTGGGAG 9123307 29 100.0 32 ............................. TACAGCTATCAGATCGACGAGCGGGTTGCATC 9123368 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.2 32 GTCTTCCCCGCGCGAGCGGGGGTGGTCCC # Left flank : AGCAGTTCGGCGTACTCATCGGTGTTGCCGGACCAGGCACGCGCGAACGCCTCGTGGGACACGCGCCCGCACAGGAACAGGTCGCTGCCCCGCAACGCGTCAACGGCACCGCGCCTGCTGGTTCCGCCGCGGGTCGAGACCTGATTTGCGGCTGGGAGGAATCGCCGGGCACCACGGGCCCGACGGGGGAATGGGCGGGCGGCGCACCGTCCACAACGGCCGCACGCCCCCTGCCCGCCCGGCGGGACAGGAACGCGGTCCGGCGCGGTGCTGAGCGTGCCCCCGGTGCGACCTGTACCGCATTGACACCGGATTATCGGGCCGGTGACCTGGTATTTCGCGTCCGTCTGCCGCTCGACAGGACATCCCACCATCCGGTGACCAAATCATAAGTCGTCGGCCAGTGCTCTGGTGTGACGTCGCCTCACCGGAGCAGACTCCAGGCGGACAAACTGAAAGAAAAACGACGATCGGGCCTATATTGTGCCTGGTCAAGAAGT # Right flank : GGCGCCACCGGCCCCACCGGGTCAAGCGGTGCGCCCCTGGTGCTGTTGGTCACATGGGCGGAATGCCGGTCGAGCTGCGCCGCTGCCCACGCCGGGTCACCGCGATCATCGTGGCCGTCCTCGTCCTGCACCACGCCGAGACCCGCCGCCAACCACGGTGAGAGCACCTCGCTGCGGCCCACCCCGCGCCCCGTGCCGGTTCGGCAGGCACCACCACCGCAGATCACGACTACGCGGTTGACGTCGGTCCTGCCGGGCGCGTGGTCACTCATCGCAGCCGACAACTCCCGGAAGGACTGGTTTCGGCGAACGGACGCCGACGACATGATCAGCAAGGAGGAGTTCGGCAGGTTCCTGCGGGAGGTCTGGGGTACTACCGCACCCGAGGCGGTGGAGGTGTTCACGGATCTGGACGAGGACGAGGACGAACGCATCACCCGCCAGCAGTTCCTCCAGTCGGTTCGGGAGTTCTACCACTCCACGGACCCGGGTGCGTCGGG # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 9131708-9132103 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034550.1 Saccharothrix syringae strain NRRL B-16468 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9131708 29 100.0 32 ............................. CCGCGTTGCGGCCGGGCGGGCTTGGCCGGCTG 9131769 29 96.6 32 ............................G AAGGCGTCTACATCAGCGTGCCCGCAGGCAAG 9131830 29 100.0 32 ............................. CAGACGGCCGCGCGTCCGCGCTCCGTGTCCTC 9131891 29 93.1 32 ...............A............G CGCTGCGCGACCCGGCCCGCTTCACGCCCGCC 9131952 29 96.6 32 .....................A....... GTGGTGACCTGGCCCTTGGTGTTGCTGGCCGC 9132013 28 86.2 32 .....-.T.................T..G TACTACCGAGTGTTGGCGATCGGCGTGGACAG G,A [9132015,9132035] 9132075 29 82.8 0 .........AT.T.........C.....A | ========== ====== ====== ====== ============================= ================================ ================== 7 29 93.6 32 GTCTTCCCCGCGCGAGCGGGGGTGGCCCC # Left flank : CGAAAAATAAACTGTAGTTTACATTTACCACCAGTGCGTATTATGGCGCACTAAGCGGCCGTTTCCGAGCTTGAGCAGGTGAAGGCCGTTTGGTGCGCAGACGGGGGAACTCATGGTGGATCGGACGTTGCCTAAGCGCCGCTCTGCCAGGAGTTCTGTTGTTATCGTGCCCCTGATGTCCGCGGGCGGCTCCACTGCGGGTAACCGTGTTGCCGTTTGGCCGCCTCCCACCGGCCCACCCTGCACACGGCTCGGTGTCCCACCAACGTCACCGACGCCCAGTGGTGCGACATGTACCGCATTGACACCGGATTCTCGGGCCGGTGACCTGGTATTTCGCGTCCGTCTGCCGCTCGACAGGACACCCCATCGTCCGATGATGGATGCATAGATCGATGGTTGGTCGCCGTCACCGCGCCGGAACCGATTCGCAGCACCTCCACGCGAACAAACTGAATGAGAAACAACGACCAGACCTGTAACGTGCCTGGTCAGCAAGT # Right flank : AACAACGGGCTCAGCCCCCGGAGAATTGACCATGGAGTCTTCCGGGGATCACGCCTACAAGGTCCAGCCCGGTCACGATGACGTGGTGTGGTGCGCCTGCCAGCCAAGGGAAGAGGACGTCCAGATTGACCCATACCGACGCGAGGACCGGTCTGCTTCCGTAGACGTTGTCGCCCTCCCGCATGAACGGGCTGTTGATCACGATGCGCCTGCCTACCTCGCACCGGCCGTCGTCCGCATGCGGTGGAGGATGAGTTCGCCGCAGGGTTCGTCGTCGAGTTCGGCACGGTCGGGGCTTGGGCGGCCGCTGGTCAACTTCGTGGAAAGGAGTGTTCAGCTGGAGTTCGGCCCTGTGAACACTTCATGACGACCTCGATCACGCTCTAGTTCACCCCTGATGCCACCGGCCTGATCATCGGCACCAACCGACTCCATGAACTTCGAGTAGGGCAGGCGAGTCACTGGCCTCCGCCTACCAAAGTCGACCGGAGTGCACAGGC # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //